MTR_8g013860 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_8g013860 T002954_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.760 0.880
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.760 0.880
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.689 0.880
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.689 0.880
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.689 0.880
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.684 0.860
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.684 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AET01470 AP2 45 96

Links

Other AP2 family TFs
Other Medicago truncatula TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.824
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.815
MDP0000790788 Malus domestica MDP0000790788 I 0.792
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.783
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.775
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.768
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.768
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.760
Bra009862 Brassica rapa Bra009862 I 0.760
Bo7g095710 Brassica oleracea Bo7g095710 I 0.760
TINY Arabidopsis thaliana AT5G25810 D 0.760
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.758
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.758
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.757
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.756
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.756
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.754
Bo2g010530 Brassica oleracea Bo2g010530 I 0.754
Bra023332 Brassica rapa Bra023332 I 0.754
Cla021417 Citrullus lanatus Cla021417 I 0.753
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.753
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.751
Ca_28185 Cicer arietinum Ca_28185 I 0.749
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.749
MDP0000174352 Malus domestica MDP0000174352 I 0.749
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.749
Ca_01908 Cicer arietinum Ca_01908 I 0.749
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.745
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.744
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.744
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.743
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.743
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.740
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.740
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.740
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.740
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.738
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.738
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.733
TCM_037194 Theobroma cacao TCM_037194 I 0.733
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.733
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.733
PK28082.1 Cannabis sativa PK28082.1 I 0.733
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.733
Pm005151 Prunus mume Pm005151 I 0.733
29794.m003381 Ricinus communis 29794.m003381 I 0.733
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.733
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.733
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.733
MDP0000241650 Malus domestica MDP0000241650 I 0.733
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.733
MDP0000242611 Malus domestica MDP0000242611 I 0.733
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.733
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.733
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.733
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.733
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.732
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.732
Bo9g170060 Brassica oleracea Bo9g170060 I 0.732
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.732
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.732
Bra008952 Brassica rapa Bra008952 I 0.732
DREB3 Arabidopsis thaliana AT5G11590 I 0.732
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.731
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.730
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.730
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.729
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.729
Bo6g077080 Brassica oleracea Bo6g077080 I 0.728
Bra003415 Brassica rapa Bra003415 I 0.728
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.727
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.725
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.725
mgf026339m Mimulus guttatus mgf026339m I 0.724
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.722
mgf024703m Mimulus guttatus mgf024703m I 0.722
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.721
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.719
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.719
Cla022553 Citrullus lanatus Cla022553 I 0.718
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.717
Ca_14911 Cicer arietinum Ca_14911 I 0.716
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.715
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.715
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.715
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.715
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.712
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.712
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.712
F775_04501 Aegilops tauschii F775_04501 I 0.712
Bo8g095240 Brassica oleracea Bo8g095240 I 0.706
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.706
Bra007539 Brassica rapa Bra007539 I 0.706
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.705
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.705
Bo9g011210 Brassica oleracea Bo9g011210 I 0.701
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.701
Bra036552 Brassica rapa Bra036552 I 0.701
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.698
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.698
Ca_18948 Cicer arietinum Ca_18948 I 0.698
Si010703m.g Setaria italica Si010703m.g I 0.698
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.698
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.698
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.698
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.698
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.698
MTR_2g101340 Medicago truncatula MTR_2g101340 I 0.698
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.698
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.698
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.698
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.698
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.698
OS04G0549700 Oryza sativa OS04G0549700 I 0.698
OS02G0656600 Oryza sativa OS02G0656600 I 0.698
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.698
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.698
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.698
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.698
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.698
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.698
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.698
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.697
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.697
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.695
OS02G0657000 Oryza sativa OS02G0657000 I 0.695
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.695
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.695
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.695
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.695
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.695
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.695
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.695
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.695
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.695
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.695
Si012254m.g Setaria italica Si012254m.g I 0.695
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.695
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.695
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.695
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.695
OS04G0550200 Oryza sativa OS04G0550200 I 0.695
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.695
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.695
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.694
BRADI5G17640 Brachypodium distachyon BRADI5G17640 I 0.693
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.693
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.693
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.693
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.692
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.692
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.692
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.692
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.692
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.692
OS04G0549800 Oryza sativa OS04G0549800 I 0.692
OBART04G20820 Oryza barthii OBART04G20820 I 0.692
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.692
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.692
TCM_015930 Theobroma cacao TCM_015930 I 0.692
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.692
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.692
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.692
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.692
Pm013463 Prunus mume Pm013463 I 0.690
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.689
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.689
Bra005314 Brassica rapa Bra005314 I 0.689
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.689
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.689
Bo4g036220 Brassica oleracea Bo4g036220 I 0.689
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.689
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.689
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.689
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.689
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.688
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.688
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.688
MDP0000652413 Malus domestica MDP0000652413 I 0.688
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.687
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.687
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.687
TCM_005639 Theobroma cacao TCM_005639 I 0.687
Gorai.001G176500 Gossypium raimondii Gorai.001G176500 I 0.686
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.685
BRADI5G17630 Brachypodium distachyon BRADI5G17630 N 0.685
30174.m008790 Ricinus communis 30174.m008790 I 0.685
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.685
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.685
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.685
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.684
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.684
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.684
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.684
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.684
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.684
ERF034 Arabidopsis thaliana AT2G44940 D 0.684
Cla015715 Citrullus lanatus Cla015715 I 0.684
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.684
Pm017610 Prunus mume Pm017610 I 0.684
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.684
Cla005715 Citrullus lanatus Cla005715 I 0.683
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.683
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.683
PK01156.1 Cannabis sativa PK01156.1 I 0.683
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.683
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.682
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.681
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.681
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.681
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.681
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.681
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.681
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.680
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.680
mgf024816m Mimulus guttatus mgf024816m I 0.679
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.679
Cla012859 Citrullus lanatus Cla012859 I 0.679
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.679
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.678
Bra040333 Brassica rapa Bra040333 I 0.678
Bra004878 Brassica rapa Bra004878 I 0.678
Bo4g024220 Brassica oleracea Bo4g024220 I 0.678
Bo4g195280 Brassica oleracea Bo4g195280 I 0.678
Bo1g009990 Brassica oleracea Bo1g009990 I 0.677
Bra011383 Brassica rapa Bra011383 I 0.677
TCM_014892 Theobroma cacao TCM_014892 I 0.677
SapurV1A.0540s0020 Salix purpurea SapurV1A.0540s0020 I 0.677