CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB09G23520
(
Oryza brachyantha
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
OB09G23520
T003058_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.722
0.800
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.722
0.800
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB09G23520.1
AP2
25
70
RRFVGVRQRPSGRWVAEIKDSAQRVRLWLGTFDTAEEAARAYDEAA
Links
Other
AP2
family TFs
Other
Oryza brachyantha
TFs
218 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy