OBART02G22620 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART02G22620 T003086_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH

DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.767 0.800
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN

NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.749 0.740
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH

DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.749 0.740
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN

NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.749 0.740
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.732 0.740
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.732 0.740
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.731 0.700
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.722 0.740
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.722 0.740
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.722 0.740
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.710 0.700
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.710 0.700
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.710 0.720
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.710 0.740
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.706 0.720
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.706 0.720
ERF087
M06573_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYYD

HRRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
AT1G28160_col_a
0.703 0.720
ERF087
M06574_2.00
Arabidopsis thaliana
HDYCKCCGCCGYCR

YGRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a
0.703 0.720
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.687 0.700
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.687 0.700
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.685 0.740
HRE1
M06595_2.00
Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHKVNDN
Dap-seq
OMalley et al.(2016)
ERF73_col_a
0.681 0.640
HRE1
M06596_2.00
Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY

RYGGCGGCGGHGRNDKHDRND
Dap-seq
OMalley et al.(2016)
ERF73_colamp_a
0.681 0.640
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.679 0.720
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.679 0.720
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.679 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G22620.1 AP2 57 108

Links

Other AP2 family TFs
Other Oryza barthii TFs

734 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK15337.1 Cannabis sativa PK15337.1 D 0.000
LjSGA_085650.1 Lotus japonicus LjSGA_085650.1 I 0.000
Eucgr.B02459 Eucalyptus grandis Eucgr.B02459 I 0.000
Ciclev10028912m.g Citrus clementina Ciclev10028912m.g I 0.000
Ciclev10021521m.g Citrus clementina Ciclev10021521m.g I 0.000
Carubv10026713m.g Capsella rubella Carubv10026713m.g I 0.000
Cagra.15150s0002 Capsella grandiflora Cagra.15150s0002 I 0.000
Bostr.26833s0215 Boechera stricta Bostr.26833s0215 I 0.000
mgf012457m Mimulus guttatus mgf012457m I 0.000
Cucsa.207460 Cucumis sativus Cucsa.207460 I 0.000
Cucsa.052650 Cucumis sativus Cucsa.052650 I 0.000
Eucgr.J00957 Eucalyptus grandis Eucgr.J00957 I 0.000
evm.TU.supercontig_318.1 Carica papaya evm.TU.supercontig_318.1 I 0.000
Thhalv10014428m.g Eutrema salsugineum Thhalv10014428m.g I 0.000
orange1.1g021974m.g Citrus sinensis orange1.1g021974m.g I 0.000
MDP0000611302 Malus domestica MDP0000611302 I 0.000
MDP0000547254 Malus domestica MDP0000547254 I 0.000
Lus10042114.g Linum usitatissimum Lus10042114.g I 0.000
Gorai.009G079400 Gossypium raimondii Gorai.009G079400 I 0.000
Gorai.004G012700 Gossypium raimondii Gorai.004G012700 I 0.000
Gorai.001G129500 Gossypium raimondii Gorai.001G129500 I 0.000
gene25330-v1.0-hybrid Fragaria vesca gene25330-v1.0-hybrid I 0.000
cassava3570.m1 Manihot esculenta cassava3570.m1 I 0.000
cassava15550.m1 Manihot esculenta cassava15550.m1 I 0.000
29688.m000255 Ricinus communis 29688.m000255 I 0.000
GLYMA12G07710 Glycine max GLYMA12G07710 I 0.000
GLYMA11G15761 Glycine max GLYMA11G15761 I 0.000
TMO6 Arabidopsis lyrata fgenesh2_kg.8__1974__AT5G60200.1 I 0.000
Bra020261 Brassica rapa Bra020261 I 0.000
Bra006675 Brassica rapa Bra006675 I 0.000
Bra002504 Brassica rapa Bra002504 I 0.000
Bo9g141200 Brassica oleracea Bo9g141200 I 0.000
Bo3g017520 Brassica oleracea Bo3g017520 I 0.000
Bo2g025060 Brassica oleracea Bo2g025060 I 0.000
MTR_2g093220 Medicago truncatula MTR_2g093220 I 0.000
MTR_4g461080 Medicago truncatula MTR_4g461080 I 0.000
PGSC0003DMG400007506 Solanum tuberosum PGSC0003DMG400007506 I 0.000
Pm000958 Prunus mume Pm000958 I 0.000
Cla005140 Citrullus lanatus Cla005140 I 0.000
Cla000551 Citrullus lanatus Cla000551 I 0.000
Ca_14610 Cicer arietinum Ca_14610 I 0.000
Ca_02510 Cicer arietinum Ca_02510 I 0.000
VIT_06s0004g03420 Vitis vinifera VIT_06s0004g03420 I 0.000
TCM_041105 Theobroma cacao TCM_041105 I 0.000
Solyc06g075370.2 Solanum lycopersicum Solyc06g075370.2 I 0.000
PRUPE_ppa009811mg Prunus persica PRUPE_ppa009811mg I 0.000
AMTR_s00080p00087770 Amborella trichopoda AMTR_s00080p00087770 I 0.000