OBART03G05640 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART03G05640 T003100_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.861 0.850
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.861 0.850
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.857 0.860
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.857 0.860
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.843 0.840
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.843 0.840
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.800 0.820
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.800 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G05640.1 AP2 252 309
OBART03G05640.1 AP2 351 399

Links

Other AP2 family TFs
Other Oryza barthii TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FKH2 Saccharomyces cerevisiae YNL068C D 0.000
XP_002493610.1 Pichia pastoris XP_002493610.1 I 0.000
SU7_2990 Saccharomyces arboricola SU7_2990 I 0.000
SPAPADRAFT_141274 Spathaspora passalidarum SPAPADRAFT_141274 I 0.000
PICST_82259 Scheffersomyces stipitis PICST_82259 I 0.000
PGUG_02044 Meyerozyma guilliermondii PGUG_02044 I 0.000
PAS_chr4_0205 Komagataella pastoris PAS_chr4_0205 I 0.000
NDAI_0F02370 Naumovozyma dairenensis NDAI_0F02370 I 0.000
LELG_02201 Lodderomyces elongisporus LELG_02201 I 0.000
LALA0_S04e08592g Lachancea lanzarotensis LALA0_S04e08592g I 0.000
KUCA_T00002120001 Kuraishia capsulata KUCA_T00002120001 I 0.000
TBLA_0E03730 Tetrapisispora blattae TBLA_0E03730 I 0.000
TBLA_0G02620 Tetrapisispora blattae TBLA_0G02620 I 0.000
SAKL0E09020g Lachancea kluyveri SAKL0E09020g I 0.000
Kwal_4740 Kluyveromyces waltii Kwal_4740 I 0.000
KLTH0G09086g Kluyveromyces thermotolerans KLTH0G09086g I 0.000
19078_YNL068C Saccharomyces paradoxus 19078_YNL068C I 0.000
18607_YNL068C Saccharomyces mikatae 18607_YNL068C I 0.000
estExt_gwp_genewisePlus_worm.C_chr_2.12159 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_2.12159 I 0.000
ZYRO0A01254g Zygosaccharomyces rouxii ZYRO0A01254g I 0.000
TPHA_0F01390 Tetrapisispora phaffii TPHA_0F01390 I 0.000
TDEL_0C04470 Torulaspora delbrueckii TDEL_0C04470 I 0.000
Kpol_1039p10 Vanderwaltozyma polyspora Kpol_1039p10 I 0.000
Kpol_1003p6 Vanderwaltozyma polyspora Kpol_1003p6 I 0.000
KNAG_0M01920 Kazachstania naganishii KNAG_0M01920 I 0.000
CD36_80620 Candida dubliniensis CD36_80620 I 0.000
CaO19.5389 Candida albicans CaO19.5389 I 0.000
CaO19.12844 Candida albicans CaO19.12844 I 0.000
CANTEDRAFT_130674 Candida tenuis CANTEDRAFT_130674 I 0.000
CAGL0J10120g Candida glabrata CAGL0J10120g I 0.000
BN7_2053 Wickerhamomyces ciferrii BN7_2053 I 0.000
AGOS_AER369C Ashbya gossypii AGOS_AER369C I 0.000
PGUG_02044 Candida guilliermondii PGUG_02044 I 0.000
CPAG_03572 Candida parapsilosis CPAG_03572 I 0.000
CLUG_01333 Clavispora lusitaniae CLUG_01333 I 0.000
CORT_0D07370 Candida orthopsilosis CORT_0D07370 I 0.000
CTRG_05718 Candida tropicalis CTRG_05718 I 0.000
KLTH0G09086g Lachancea thermotolerans KLTH0G09086g I 0.000
KAFR_0J00890 Kazachstania africana KAFR_0J00890 I 0.000
JL09_g1492 Pichia kudriavzevii JL09_g1492 I 0.000
HPODL_02534 Ogataea parapolymorpha HPODL_02534 I 0.000
GNLVRS01_PISO0F06649g Millerozyma farinosa GNLVRS01_PISO0F06649g I 0.000
GNLVRS01_PISO0E05328g Millerozyma farinosa GNLVRS01_PISO0E05328g I 0.000
G210_3526 Candida maltosa G210_3526 I 0.000
Ecym_5396 Eremothecium cymbalariae Ecym_5396 I 0.000
DEHA2A08910g Debaryomyces hansenii DEHA2A08910g I 0.000
CLUG_01333 Candida lusitaniae CLUG_01333 I 0.000