CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART08G17900
(
Oryza barthii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
OBART08G17900
T003165_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN
NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.734
0.956
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.677
0.778
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.677
0.778
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.677
0.778
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART08G17900.1
AP2
84
130
VCGRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGP
Links
Other
AP2
family TFs
Other
Oryza barthii
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy