CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART09G07840
(
Oryza barthii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
OBART09G07840
T003168_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.789
0.915
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.789
0.915
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.789
0.915
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.690
0.851
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.690
0.851
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART09G07840.1
AP2
109
157
KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDQAASRD
Links
Other
AP2
family TFs
Other
Oryza barthii
TFs
424 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy