ORGLA04G0237600 (Oryza glaberrima)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 ORGLA04G0237600 T003894_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.758 0.840
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.758 0.840
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.756 0.840
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.756 0.840
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.756 0.840
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.756 0.840
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.748 0.820
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.748 0.820
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.746 0.820
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.746 0.780
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.746 0.780
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.707 0.780
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.707 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA04G0237600.1 AP2 60 111

Links

Other AP2 family TFs
Other Oryza glaberrima TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.817
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.817
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.817
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.817
OS04G0648900 Oryza sativa OS04G0648900 I 0.817
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.817
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.817
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.817
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.817
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.817
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.817
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.817
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.817
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.816
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.816
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.799
OBART06G04460 Oryza barthii OBART06G04460 I 0.799
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.799
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.799
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.799
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.799
OS06G0166400 Oryza sativa OS06G0166400 I 0.799
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.799
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.799
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.799
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.799
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.799
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.799
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.782
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.778
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.778
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.778
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.778
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.776
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.776
MDP0000756341 Malus domestica MDP0000756341 I 0.776
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.776
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.771
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.771
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.770
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.769
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.767
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.766
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.766
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.766
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.766
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.766
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.766
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.766
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.766
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.764
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.764
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.764
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.764
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.764
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.764
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.764
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.764
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.764
30170.m013843 Ricinus communis 30170.m013843 I 0.764
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.764
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.764
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.764
Ca_02170 Cicer arietinum Ca_02170 I 0.764
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.764
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.764
Cla020961 Citrullus lanatus Cla020961 I 0.763
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.763
PK15612.1 Cannabis sativa PK15612.1 I 0.763
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.763
Bra014056 Brassica rapa Bra014056 I 0.763
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.763
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.763
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.761
TCM_033791 Theobroma cacao TCM_033791 I 0.761
TCM_000669 Theobroma cacao TCM_000669 I 0.760
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.760
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.760
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.760
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.760
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.760
28718.m000038 Ricinus communis 28718.m000038 I 0.758
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.758
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.758
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.758
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.758
MDP0000179962 Malus domestica MDP0000179962 I 0.758
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.758
MDP0000125673 Malus domestica MDP0000125673 I 0.758
mgf006561m Mimulus guttatus mgf006561m I 0.757
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.757
Cla022937 Citrullus lanatus Cla022937 I 0.757
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.757
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.757
mgf025363m Mimulus guttatus mgf025363m I 0.756
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.756
Bra037124 Brassica rapa Bra037124 I 0.756
ERF008 Arabidopsis thaliana AT2G23340 D 0.756
Bo9g020380 Brassica oleracea Bo9g020380 I 0.756
Bra011744 Brassica rapa Bra011744 I 0.755
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.753
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.753
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.752
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.752
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.752
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.752
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.752
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.752
mgf000289m Mimulus guttatus mgf000289m I 0.752
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.752
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.751
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.750
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.750
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.750
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.750
mgf021115m Mimulus guttatus mgf021115m I 0.749
Bra036061 Brassica rapa Bra036061 I 0.748
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.748
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.748
Bo7g063980 Brassica oleracea Bo7g063980 I 0.748
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.748
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.748
ERF010 Arabidopsis thaliana AT5G67190 D 0.748
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.748
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.748
Bo8g079660 Brassica oleracea Bo8g079660 I 0.748
Bra017811 Brassica rapa Bra017811 I 0.746
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.746
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.746
ERF011 Arabidopsis thaliana AT3G50260 D 0.746
Bo4g151460 Brassica oleracea Bo4g151460 I 0.746
Bo7g118430 Brassica oleracea Bo7g118430 I 0.746
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.746
Bra032173 Brassica rapa Bra032173 I 0.746
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.746
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.746
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.746
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.746
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.746
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.746
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.746
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.746
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.746
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.746
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.746
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.742
Cla014175 Citrullus lanatus Cla014175 I 0.742
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.740
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.739
Cla020550 Citrullus lanatus Cla020550 I 0.739
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.739
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.738
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.738
Bo1g004940 Brassica oleracea Bo1g004940 I 0.737
Bra012140 Brassica rapa Bra012140 I 0.736
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.726
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.717
Ca_01556 Cicer arietinum Ca_01556 I 0.717
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.709
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.707
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.705
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.704