ORUFI06G04420 (Oryza rufipogon)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 ORUFI06G04420 T004056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.768 0.880
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.768 0.880
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.763 0.880
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.763 0.880
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.762 0.880
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.762 0.840
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.762 0.840
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.752 0.860
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.752 0.860
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.752 0.860
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.752 0.860
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.716 0.820
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.716 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI06G04420.1 AP2 43 94

Links

Other AP2 family TFs
Other Oryza rufipogon TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.815
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.815
OBART06G04460 Oryza barthii OBART06G04460 I 0.815
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.815
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.815
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.815
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.815
OS06G0166400 Oryza sativa OS06G0166400 I 0.815
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.815
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.815
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.815
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.815
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.799
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.799
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.799
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.799
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.799
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.799
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.799
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.799
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.799
OS04G0648900 Oryza sativa OS04G0648900 I 0.799
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.799
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.799
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.799
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.799
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.798
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.798
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.794
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.794
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.794
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.794
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.792
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.791
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.787
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.786
MDP0000756341 Malus domestica MDP0000756341 I 0.785
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.785
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.782
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.782
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.782
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.782
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.782
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.782
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.782
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.780
Ca_02170 Cicer arietinum Ca_02170 I 0.780
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.780
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.780
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.780
30170.m013843 Ricinus communis 30170.m013843 I 0.780
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.780
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.780
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.780
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.780
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.780
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.780
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.780
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.779
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.779
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.775
TCM_000669 Theobroma cacao TCM_000669 I 0.775
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.775
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.775
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.775
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.775
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.774
MDP0000179962 Malus domestica MDP0000179962 I 0.774
MDP0000125673 Malus domestica MDP0000125673 I 0.774
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.774
28718.m000038 Ricinus communis 28718.m000038 I 0.774
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.773
PK15612.1 Cannabis sativa PK15612.1 I 0.773
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.772
Bra014056 Brassica rapa Bra014056 I 0.772
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.772
Cla020961 Citrullus lanatus Cla020961 I 0.772
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.772
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.772
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.772
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.772
Bra011744 Brassica rapa Bra011744 I 0.771
mgf025363m Mimulus guttatus mgf025363m I 0.771
TCM_033791 Theobroma cacao TCM_033791 I 0.770
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.770
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.769
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.769
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.768
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.768
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.768
mgf000289m Mimulus guttatus mgf000289m I 0.767
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.767
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.767
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.767
Cla022937 Citrullus lanatus Cla022937 I 0.766
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.766
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.766
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.766
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.766
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.766
mgf021115m Mimulus guttatus mgf021115m I 0.765
Bra036061 Brassica rapa Bra036061 I 0.763
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.763
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.763
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.763
Bo7g063980 Brassica oleracea Bo7g063980 I 0.763
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.763
ERF010 Arabidopsis thaliana AT5G67190 D 0.763
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.763
Bo8g079660 Brassica oleracea Bo8g079660 I 0.763
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.763
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.763
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.763
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.762
ERF011 Arabidopsis thaliana AT3G50260 D 0.762
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.762
Bo4g151460 Brassica oleracea Bo4g151460 I 0.762
Bo7g118430 Brassica oleracea Bo7g118430 I 0.762
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.762
Bra032173 Brassica rapa Bra032173 I 0.762
Bra017811 Brassica rapa Bra017811 I 0.762
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.762
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.762
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.762
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.762
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.762
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.762
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.762
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.762
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.762
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.762
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.762
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.762
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.762
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.761
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.761
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.760
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.760
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.759
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.759
mgf006561m Mimulus guttatus mgf006561m I 0.758
Cla014175 Citrullus lanatus Cla014175 I 0.758
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.758
Bo9g020380 Brassica oleracea Bo9g020380 I 0.757
Bra037124 Brassica rapa Bra037124 I 0.757
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.756
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.755
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.755
Cla020550 Citrullus lanatus Cla020550 I 0.755
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.754
ERF008 Arabidopsis thaliana AT2G23340 D 0.752
Bo1g004940 Brassica oleracea Bo1g004940 I 0.752
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.750
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.748
Bra012140 Brassica rapa Bra012140 I 0.742
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.722
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.721
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.720
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.719
Ca_01556 Cicer arietinum Ca_01556 I 0.719
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.719
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.716