CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400003706
(
Solanum tuberosum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
PGSC0003DMG400003706
T004345_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.693
0.837
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.693
0.837
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.693
0.837
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400009506
AP2
29
80
CTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDNSYDAAVVYDAAALKLYGA
Links
Other
AP2
family TFs
Other
Solanum tuberosum
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy