PGSC0003DMG400004005 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400004005 T004346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.801 0.940
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.801 0.940
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.800 0.940
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.799 0.900
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.799 0.900
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.790 0.920
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.790 0.920
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.790 0.920
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.790 0.920
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.771 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.771 0.920
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.738 0.840
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.738 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400010228 AP2 27 78

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.800
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.738
ERF008 Arabidopsis thaliana AT2G23340 D 0.790
ERF011 Arabidopsis thaliana AT3G50260 D 0.799
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.771
ERF010 Arabidopsis thaliana AT5G67190 D 0.801
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.744
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.763
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.800
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.800
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.784
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.801
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.802
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.804
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.801
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.799
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.801
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.800
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.799
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.784
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.800
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.800
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.800
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.784
mgf025363m Mimulus guttatus mgf025363m I 0.777
mgf021115m Mimulus guttatus mgf021115m I 0.825
mgf006561m Mimulus guttatus mgf006561m I 0.819
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.760
Ca_01556 Cicer arietinum Ca_01556 I 0.741
Ca_02170 Cicer arietinum Ca_02170 I 0.783
Cla014175 Citrullus lanatus Cla014175 I 0.767
Cla020550 Citrullus lanatus Cla020550 I 0.749
Cla020961 Citrullus lanatus Cla020961 I 0.794
Cla022937 Citrullus lanatus Cla022937 I 0.788
28718.m000038 Ricinus communis 28718.m000038 I 0.811
30170.m013843 Ricinus communis 30170.m013843 I 0.802
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.788
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.802
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.802
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.767
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.794
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.749
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.788
mgf000289m Mimulus guttatus mgf000289m I 0.789
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.771
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.800
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.750
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.766
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.750
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.766
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.804
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.802
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.788
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.773
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.773
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.802
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.764
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.801
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.800
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.764
PK15612.1 Cannabis sativa PK15612.1 I 0.785
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.785
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.744
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.800
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.813
MDP0000756341 Malus domestica MDP0000756341 I 0.763
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.813
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.792
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.794
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.794
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.813
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.788
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.812
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.813
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.781
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.813
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.794
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.781
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.760
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.804
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.802
MDP0000125673 Malus domestica MDP0000125673 I 0.812
MDP0000179962 Malus domestica MDP0000179962 I 0.812
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.772
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.699
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.771
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.785
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.782
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.783
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.782
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.785
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.794
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.770
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.788
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.733
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.750
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.730
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.750
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.793
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.774
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.791
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.736
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.799
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.800
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.750
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.750
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.750
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.766
Bo1g004940 Brassica oleracea Bo1g004940 I 0.813
Bo4g151460 Brassica oleracea Bo4g151460 I 0.800
Bo7g063980 Brassica oleracea Bo7g063980 I 0.801
Bo7g118430 Brassica oleracea Bo7g118430 I 0.800
Bo8g079660 Brassica oleracea Bo8g079660 I 0.801
Bo9g020380 Brassica oleracea Bo9g020380 I 0.795
Bra011744 Brassica rapa Bra011744 I 0.788
Bra012140 Brassica rapa Bra012140 I 0.780
Bra014056 Brassica rapa Bra014056 I 0.794
Bra017811 Brassica rapa Bra017811 I 0.800
Bra032173 Brassica rapa Bra032173 I 0.800
Bra036061 Brassica rapa Bra036061 I 0.801
Bra037124 Brassica rapa Bra037124 I 0.795
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.766
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.756
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.747
OS06G0166400 Oryza sativa OS06G0166400 I 0.766
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.789
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.791
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.802
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.788
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.788
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.802
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.769
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.810
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.750
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.766
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.740
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.800
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.801
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.789
TCM_000669 Theobroma cacao TCM_000669 I 0.813
TCM_033791 Theobroma cacao TCM_033791 I 0.792
OS04G0648900 Oryza sativa OS04G0648900 I 0.750
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.766
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.766
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.759
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.787
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.804
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.750
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.766
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.749
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.783
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.741
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.783
OBART06G04460 Oryza barthii OBART06G04460 I 0.766
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.750
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.766
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.750
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.750
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.766
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.766
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.750
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.749