PGSC0003DMG400012525 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400012525 T004394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.765 0.800
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.765 0.800
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.765 0.800
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.765 0.800
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.765 0.800
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.765 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.737 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.727 0.780
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.727 0.780
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.727 0.780
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.727 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.727 0.780
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.727 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.740
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.692 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.692 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.692 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032622 AP2 50 101

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.830
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.817
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.810
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.804
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.803
MDP0000198054 Malus domestica MDP0000198054 I 0.793
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.793
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.791
mgf019061m Mimulus guttatus mgf019061m I 0.791
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.789
Cla011674 Citrullus lanatus Cla011674 I 0.789
mgf017136m Mimulus guttatus mgf017136m I 0.786
Pm023775 Prunus mume Pm023775 I 0.784
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.784
MDP0000154764 Malus domestica MDP0000154764 I 0.784
Pm023772 Prunus mume Pm023772 I 0.783
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.782
Pm023769 Prunus mume Pm023769 I 0.779
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.779
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.777
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.768
Bo01335s010 Brassica oleracea Bo01335s010 I 0.768
Bra016763 Brassica rapa Bra016763 I 0.768
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.767
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.766
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.765
DREB1F Arabidopsis thaliana AT1G12610 D 0.765
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.764
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.764
Bra026963 Brassica rapa Bra026963 I 0.763
Bo8g108050 Brassica oleracea Bo8g108050 I 0.763
30190.m011120 Ricinus communis 30190.m011120 I 0.761
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.760
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.760
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.760
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.759
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.759
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.759
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.758
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.758
mgf026642m Mimulus guttatus mgf026642m I 0.757
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.755
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.753
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.753
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.752
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.752
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.752
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.752
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.750
PK23332.1 Cannabis sativa PK23332.1 I 0.750
Cla006315 Citrullus lanatus Cla006315 I 0.749
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.749
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.749
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.747
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.746
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.744
60638.m00016 Ricinus communis 60638.m00016 I 0.742
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.742
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.739
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.739
TCM_016175 Theobroma cacao TCM_016175 I 0.738
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.737
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.737
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.737
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.737
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.737
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.737
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.737
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.735
Ca_08732 Cicer arietinum Ca_08732 I 0.734
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.734
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.733
30147.m014313 Ricinus communis 30147.m014313 I 0.732
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.732
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.730
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.728
DREB1D Arabidopsis thaliana AT5G51990 D 0.727
Bo9g104770 Brassica oleracea Bo9g104770 I 0.727
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.727
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.727
DREB1A Arabidopsis thaliana AT4G25480 D 0.727
Bra028290 Brassica rapa Bra028290 I 0.727
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.727
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.727
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.727
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.727
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.727
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.727
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.727
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.723
Bo5g016750 Brassica oleracea Bo5g016750 I 0.723
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.723
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.723
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.723
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.723
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.723
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.723
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.723
30190.m011119 Ricinus communis 30190.m011119 I 0.723
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.723
Bra019777 Brassica rapa Bra019777 I 0.722
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.722
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.721
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.720
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.718
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.718
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.718
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.718
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.718
Cla002362 Citrullus lanatus Cla002362 I 0.718
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.716
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.715
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.710
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.710
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.710
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.710
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.710
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.709
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.709
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.709
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.709
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.709
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.707
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.707
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.707
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.706
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.705
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.704
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.704
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.703
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.701
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.700
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.699
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.699
DREB1G Oryza indica BGIOSGA008804 I 0.699
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.699
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.699
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.699
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.699
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.699
DREB1G Oryza sativa OS02G0677300 D 0.699
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.699
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.699
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.699
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.699
OBART02G27760 Oryza barthii OBART02G27760 I 0.699
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.699
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.699
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.699
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.698
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.697
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.695
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.695
Bra027612 Brassica rapa Bra027612 I 0.694
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.693
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.693
DREB1C Arabidopsis thaliana AT4G25470 D 0.692
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.692
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.692
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.692
mgf026339m Mimulus guttatus mgf026339m I 0.689
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.689
Si018262m.g Setaria italica Si018262m.g I 0.689
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.687
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.687
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.686
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.685
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.679
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.677