PGSC0003DMG400014310 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400014310 T004414_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.798 0.960
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.798 0.960
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.759 0.880
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.759 0.880
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.759 0.880
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.758 0.920
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.758 0.920
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.758 0.920
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.758 0.920
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.722 0.860
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.722 0.860
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.694 0.780
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.694 0.780
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.691 0.780
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.691 0.780
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.691 0.780
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.691 0.780
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.691 0.780
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.691 0.780
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.688 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400037121 AP2 51 102

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.836
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.818
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.800
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.798
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.798
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.798
Bra028290 Brassica rapa Bra028290 I 0.798
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.798
DREB1D Arabidopsis thaliana AT5G51990 D 0.798
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.798
Bo9g104770 Brassica oleracea Bo9g104770 I 0.798
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.797
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.795
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.790
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.788
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.788
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.788
Cla002362 Citrullus lanatus Cla002362 I 0.785
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.784
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.784
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.782
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.781
mgf026642m Mimulus guttatus mgf026642m I 0.781
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.780
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.776
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.775
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.775
PK23332.1 Cannabis sativa PK23332.1 I 0.775
Cla006315 Citrullus lanatus Cla006315 I 0.774
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.766
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.765
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.762
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.761
30147.m014313 Ricinus communis 30147.m014313 I 0.761
DREB1C Arabidopsis thaliana AT4G25470 D 0.759
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.759
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.758
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.758
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.758
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.758
DREB1A Arabidopsis thaliana AT4G25480 D 0.758
Ca_18948 Cicer arietinum Ca_18948 I 0.757
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.753
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.752
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.752
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.751
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.749
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.749
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.749
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.749
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.748
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.746
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.745
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.745
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.745
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.744
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.744
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.744
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.743
mgf022408m Mimulus guttatus mgf022408m I 0.743
mgf018934m Mimulus guttatus mgf018934m I 0.743
mgf018631m Mimulus guttatus mgf018631m I 0.743
mgf016974m Mimulus guttatus mgf016974m I 0.743
30190.m011120 Ricinus communis 30190.m011120 I 0.742
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.741
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.739
mgf017136m Mimulus guttatus mgf017136m I 0.739
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.739
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.739
MDP0000154764 Malus domestica MDP0000154764 I 0.739
MDP0000198054 Malus domestica MDP0000198054 I 0.738
Cla011674 Citrullus lanatus Cla011674 I 0.737
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.736
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.736
Pm023775 Prunus mume Pm023775 I 0.736
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.734
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.732
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.732
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.732
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.730
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.729
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.729
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.728
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.728
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.728
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.726
TCM_016175 Theobroma cacao TCM_016175 I 0.726
Bra022770 Brassica rapa Bra022770 I 0.725
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.725
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.723
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.723
mgf019061m Mimulus guttatus mgf019061m I 0.723
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.723
Bo7g110320 Brassica oleracea Bo7g110320 I 0.722
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.722
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.722
Bra019162 Brassica rapa Bra019162 I 0.722
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.721
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.721
mgf026339m Mimulus guttatus mgf026339m I 0.721
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.721
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.721
Pm023769 Prunus mume Pm023769 I 0.721
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.721
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.717
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.717
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.715
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.715
60638.m00016 Ricinus communis 60638.m00016 I 0.715
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.715
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.714
Bra010460 Brassica rapa Bra010460 I 0.714
Bo8g050800 Brassica oleracea Bo8g050800 I 0.714
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.713
Pm023772 Prunus mume Pm023772 I 0.713
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.712
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.712
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.710
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.710
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.709
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.708
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.708
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.707
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.706
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.703
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.703
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.703
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.703
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.703
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.703
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.703
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.703
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.703
30190.m011119 Ricinus communis 30190.m011119 I 0.702
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.699
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.699
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.699
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.698
Bo01335s010 Brassica oleracea Bo01335s010 I 0.698
Bra016763 Brassica rapa Bra016763 I 0.698
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.696
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.696
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.694
DREB1G Oryza sativa OS02G0677300 D 0.694
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.694
Ca_04504 Cicer arietinum Ca_04504 I 0.694
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.694
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.694
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.694
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.694
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.694
OBART02G27760 Oryza barthii OBART02G27760 I 0.694
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.694
DREB1G Oryza indica BGIOSGA008804 I 0.694
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.694
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.694
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.694
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.694
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.693
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.692
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.692
DREB1F Arabidopsis thaliana AT1G12610 D 0.691
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.691
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.690
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.689
Bra026963 Brassica rapa Bra026963 I 0.689
Bo8g108050 Brassica oleracea Bo8g108050 I 0.689
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.688
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.688
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.688
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.688
DREB1E Oryza sativa OS04G0572400 D 0.688
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.688
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.688
OBART04G22220 Oryza barthii OBART04G22220 I 0.688
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.688
DREB1E Oryza indica BGIOSGA016950 I 0.688
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.686
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.685
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.684
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.684
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.684
Si018262m.g Setaria italica Si018262m.g I 0.684
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.683
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.683
Pm019386 Prunus mume Pm019386 I 0.683
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.682
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.682
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.681
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.681
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.679
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.678
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.678
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.677