PGSC0003DMG400014417 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400014417 T004416_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR

YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.741 0.891
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.741 0.891
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR

YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.741 0.891
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.739 0.826
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.739 0.826
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.739 0.826
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR

YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.706 0.804
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.681 0.761
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.681 0.761
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.681 0.761
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.679 0.696
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.679 0.696
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.679 0.696
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400037359 AP2 29 79

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29640.m000403 Ricinus communis 29640.m000403 I 0.817
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.817
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.810
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.806
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.806
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.806
PK25211.1 Cannabis sativa PK25211.1 I 0.806
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.798
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.798
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.797
mgf016282m Mimulus guttatus mgf016282m I 0.796
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.796
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.796
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.796
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.796
Pm014953 Prunus mume Pm014953 I 0.796
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.796
MDP0000839828 Malus domestica MDP0000839828 I 0.796
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.796
mgf007166m Mimulus guttatus mgf007166m I 0.795
MDP0000629527 Malus domestica MDP0000629527 I 0.791
Pm011907 Prunus mume Pm011907 I 0.791
MDP0000542633 Malus domestica MDP0000542633 I 0.791
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.786
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.783
Cla005423 Citrullus lanatus Cla005423 I 0.779
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.774
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.774
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.773
MDP0000744693 Malus domestica MDP0000744693 I 0.769
MDP0000243113 Malus domestica MDP0000243113 I 0.769
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.768
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.768
Bo6g022410 Brassica oleracea Bo6g022410 I 0.768
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.767
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.767
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.765
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.765
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.762
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.761
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.759
Cla003319 Citrullus lanatus Cla003319 I 0.759
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.757
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.757
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.753
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.752
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.748
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.744
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.743
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.743
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.743
TCM_030804 Theobroma cacao TCM_030804 I 0.743
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.742
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.742
Cla013723 Citrullus lanatus Cla013723 I 0.742
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.741
ERF3 Arabidopsis thaliana AT1G50640 D 0.741
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.740
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.739
ERF7 Arabidopsis thaliana AT3G20310 D 0.739
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.738
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.738
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.738
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.737
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.737
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.737
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.737
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.737
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.737
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.737
Ca_17824 Cicer arietinum Ca_17824 I 0.736
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.735
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.734
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.730
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.729
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.729
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.729
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.729
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.729
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.727
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.727
Bra018864 Brassica rapa Bra018864 I 0.727
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.722
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.722
PK02998.1 Cannabis sativa PK02998.1 I 0.722
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.722
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.722
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.722
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.722
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.722
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.721
Ca_12205 Cicer arietinum Ca_12205 I 0.720
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.720
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.719
Pm020210 Prunus mume Pm020210 I 0.717
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.717
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.717
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.716
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.716
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.716
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.716
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.716
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.715
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.714
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.714
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.711
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.710
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.710
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.710
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.708
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.708
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.708
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.708
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.708
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.707
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.707
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.706
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.706
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.706
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.706
PK17878.1 Cannabis sativa PK17878.1 D 0.706
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.706
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.706
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.706
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.706
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.706
mgf023367m Mimulus guttatus mgf023367m I 0.706
30190.m011323 Ricinus communis 30190.m011323 I 0.706
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.706
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.706
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.706
TCM_029823 Theobroma cacao TCM_029823 I 0.706
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.706
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.706
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.706
Cla020002 Citrullus lanatus Cla020002 I 0.706
Ca_00326 Cicer arietinum Ca_00326 I 0.706
Pm010083 Prunus mume Pm010083 I 0.706
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.706
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.706
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.706
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.706
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.705
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.705
BRADI2G52380 Brachypodium distachyon BRADI2G52380 I 0.704
TRAES3BF075600040CFD_g Triticum aestivum TRAES3BF075600040CFD_g I 0.704
Si003053m.g Setaria italica Si003053m.g I 0.704
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.703
MLOC_66843 Hordeum vulgare MLOC_66843 I 0.703
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.703
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.702
MDP0000457509 Malus domestica MDP0000457509 I 0.700
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.699
Bra001784 Brassica rapa Bra001784 I 0.698
Bo3g074840 Brassica oleracea Bo3g074840 I 0.698
Bo7g048190 Brassica oleracea Bo7g048190 I 0.697
Thhalv10009947m.g Eutrema salsugineum Thhalv10009947m.g I 0.697
Bo3g143340 Brassica oleracea Bo3g143340 I 0.697
Bra010881 Brassica rapa Bra010881 I 0.697
Carubv10011585m.g Capsella rubella Carubv10011585m.g I 0.697
Bra032898 Brassica rapa Bra032898 I 0.697
ERF12 Arabidopsis lyrata fgenesh2_kg.1__3004__AT1G28360.1 I 0.697
Cagra.1822s0023 Capsella grandiflora Cagra.1822s0023 I 0.697
Bostr.15697s0156 Boechera stricta Bostr.15697s0156 I 0.697
Bo5g055840 Brassica oleracea Bo5g055840 I 0.697
ERF12 Arabidopsis thaliana AT1G28360 I 0.697
Bra030094 Brassica rapa Bra030094 I 0.697
fgenesh1_pg.scaffold_6000034 Physcomitrella patens fgenesh1_pg.scaffold_6000034 I 0.696
Ca_20544 Cicer arietinum Ca_20544 I 0.695
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.695
ATERF-7 Arabidopsis lyrata fgenesh2_kg.3__2255__AT3G20310.1 I 0.692
e_gw1.5.258.1 Physcomitrella patens e_gw1.5.258.1 I 0.692
Pavir.Ea03148 Panicum virgatum Pavir.Ea03148 I 0.691
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.691
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.691
MDP0000310904 Malus domestica MDP0000310904 I 0.690
SELMODRAFT_59974 Selaginella moellendorffii SELMODRAFT_59974 I 0.690
MDP0000236605 Malus domestica MDP0000236605 I 0.690
SELMODRAFT_19889 Selaginella moellendorffii SELMODRAFT_19889 I 0.690
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.689
AMTR_s00077p00176570 Amborella trichopoda AMTR_s00077p00176570 I 0.688
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.688
Lus10035076.g Linum usitatissimum Lus10035076.g I 0.687
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.686
SELMODRAFT_402810 Selaginella moellendorffii SELMODRAFT_402810 I 0.684
SELMODRAFT_439762 Selaginella moellendorffii SELMODRAFT_439762 I 0.684
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.683
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.683
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.682
Lus10017907.g Linum usitatissimum Lus10017907.g I 0.682
PK23186.1 Cannabis sativa PK23186.1 I 0.682
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.681
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.681
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.681
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.681
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.681
Bra036016 Brassica rapa Bra036016 I 0.681
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.681
ERF4 Arabidopsis thaliana AT3G15210 D 0.681
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.681
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.681
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I 0.681
Bo2g122260 Brassica oleracea Bo2g122260 I 0.681
Bo5g109800 Brassica oleracea Bo5g109800 I 0.681
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.681
Bra035792 Brassica rapa Bra035792 I 0.681
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.679
Bra037630 Brassica rapa Bra037630 I 0.679
ERF13 Arabidopsis thaliana AT2G44840 D 0.679
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.679
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.679
Bra004873 Brassica rapa Bra004873 I 0.679
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.679
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.679
Bo4g024140 Brassica oleracea Bo4g024140 I 0.679
Bo4g195220 Brassica oleracea Bo4g195220 I 0.679
Si036615m.g Setaria italica Si036615m.g I 0.678
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.677
F775_20810 Aegilops tauschii F775_20810 I 0.677
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.677