PGSC0003DMG400014610 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400014610 T004421_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.762 0.898
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.702 0.857
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.702 0.857
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.702 0.857
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.702 0.857
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.702 0.857
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.682 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400037877 AP2 48 100

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc05g051180.1 Solanum lycopersicum Solyc05g051180.1 I 0.798
PGSC0003DMG400023619 Solanum tuberosum PGSC0003DMG400023619 I 0.771
Solyc04g014530.1 Solanum lycopersicum Solyc04g014530.1 I 0.771
Q5Y836_TOBAC Nicotiana tabacum Q5Y836_TOBAC D 0.762
Solyc11g011740.1 Solanum lycopersicum Solyc11g011740.1 I 0.737
PGSC0003DMG400013255 Solanum tuberosum PGSC0003DMG400013255 I 0.737
Q8LGR8_SOLLC Solanum lycopersicum Q8LGR8_SOLLC I 0.734
Solyc11g011750.1 Solanum lycopersicum Solyc11g011750.1 I 0.734
Solyc05g051200.1 Solanum lycopersicum Solyc05g051200.1 I 0.734
PGSC0003DMG400014594 Solanum tuberosum PGSC0003DMG400014594 I 0.732
PGSC0003DMG400013257 Solanum tuberosum PGSC0003DMG400013257 I 0.724
mgf017485m Mimulus guttatus mgf017485m I 0.722
Aquca_005_00139 Aquilegia coerulea Aquca_005_00139 I 0.719
PDK_20s1757341g001 Phoenix dactylifera PDK_20s1757341g001 I 0.717
PGSC0003DMG400013256 Solanum tuberosum PGSC0003DMG400013256 I 0.706
PDK_20s1325661g001 Phoenix dactylifera PDK_20s1325661g001 I 0.706
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.704
ERF1B Arabidopsis thaliana AT3G23240 D 0.702
Carubv10014553m.g Capsella rubella Carubv10014553m.g I 0.702
Bra023746 Brassica rapa Bra023746 I 0.702
ERF1 Arabidopsis lyrata scaffold_302806.1 I 0.702
mgf020623m Mimulus guttatus mgf020623m I 0.702
Thhalv10022374m.g Eutrema salsugineum Thhalv10022374m.g I 0.702
Bo1g102210 Brassica oleracea Bo1g102210 I 0.702
Cagra.8559s0001 Capsella grandiflora Cagra.8559s0001 I 0.702
Bra023745 Brassica rapa Bra023745 I 0.702
Cucsa.046660 Cucumis sativus Cucsa.046660 I 0.701
Cla009822 Citrullus lanatus Cla009822 I 0.701
Gorai.004G220800 Gossypium raimondii Gorai.004G220800 I 0.701
AMTR_s00148p00084540 Amborella trichopoda AMTR_s00148p00084540 I 0.700
PGSC0003DMG400010719 Solanum tuberosum PGSC0003DMG400010719 I 0.697
Eucgr.H04254 Eucalyptus grandis Eucgr.H04254 I 0.697
PGSC0003DMG400010750 Solanum tuberosum PGSC0003DMG400010750 I 0.697
Solyc03g093610.1 Solanum lycopersicum Solyc03g093610.1 I 0.697
OGLUM05G19620 Oryza glumaepatula OGLUM05G19620 I 0.695
OPUNC05G16280 Oryza punctata OPUNC05G16280 I 0.695
OMERI05G16180 Oryza meridionalis OMERI05G16180 I 0.695
ONIVA02G28810 Oryza nivara ONIVA02G28810 I 0.695
OGLUM02G26840 Oryza glumaepatula OGLUM02G26840 I 0.695
LPERR02G21460 Leersia perrieri LPERR02G21460 I 0.695
OMERI02G25760 Oryza meridionalis OMERI02G25760 I 0.695
BGIOSGA005915 Oryza indica BGIOSGA005915 I 0.695
ORGLA02G0226500 Oryza glaberrima ORGLA02G0226500 I 0.695
OS02G0654700 Oryza sativa OS02G0654700 I 0.695
ORUFI05G19730 Oryza rufipogon ORUFI05G19730 I 0.695
ORUFI02G27830 Oryza rufipogon ORUFI02G27830 I 0.695
OBART05G18540 Oryza barthii OBART05G18540 I 0.695
ONIVA05G19500 Oryza nivara ONIVA05G19500 I 0.695
ORGLA05G0161000 Oryza glaberrima ORGLA05G0161000 I 0.695
OPUNC02G24070 Oryza punctata OPUNC02G24070 I 0.695
Ca_00360 Cicer arietinum Ca_00360 I 0.693
Bostr.19424s0319 Boechera stricta Bostr.19424s0319 I 0.692
MDP0000805422 Malus domestica MDP0000805422 I 0.692
MDP0000689946 Malus domestica MDP0000689946 I 0.692
ORUFI03G43580 Oryza rufipogon ORUFI03G43580 I 0.691
OS03G0860100 Oryza sativa OS03G0860100 I 0.691
Traes_2AL_0B28B6DBE Triticum aestivum Traes_2AL_0B28B6DBE I 0.691
ORGLA03G0387300 Oryza glaberrima ORGLA03G0387300 I 0.691
Solyc09g066360.1 Solanum lycopersicum Solyc09g066360.1 I 0.691
OBART03G41810 Oryza barthii OBART03G41810 I 0.691
PGSC0003DMG400010285 Solanum tuberosum PGSC0003DMG400010285 I 0.691
OMERI03G15490 Oryza meridionalis OMERI03G15490 I 0.691
OLONG_002067 Oryza longistaminata OLONG_002067 I 0.691
OGLUM03G41640 Oryza glumaepatula OGLUM03G41640 I 0.691
ONIVA01G48030 Oryza nivara ONIVA01G48030 I 0.691
BGIOSGA009392 Oryza indica BGIOSGA009392 I 0.691
PK28774.1 Cannabis sativa PK28774.1 I 0.688
Gorai.007G046000 Gossypium raimondii Gorai.007G046000 I 0.688
mgf020878m Mimulus guttatus mgf020878m I 0.686
Lus10014655.g Linum usitatissimum Lus10014655.g I 0.686
mgf021081m Mimulus guttatus mgf021081m I 0.685
Gorai.001G051300 Gossypium raimondii Gorai.001G051300 I 0.685
MLOC_77669 Hordeum vulgare MLOC_77669 I 0.685
gw1.38.156.1 Physcomitrella patens gw1.38.156.1 I 0.685
AMTR_s00021p00185480 Amborella trichopoda AMTR_s00021p00185480 I 0.684
CM1489.100.nc Lotus japonicus CM1489.100.nc I 0.684
GLYMA13G30710 Glycine max GLYMA13G30710 I 0.684
cassava47034.m1 Manihot esculenta cassava47034.m1 I 0.684
Lus10027469.g Linum usitatissimum Lus10027469.g I 0.683
evm.TU.supercontig_7.36 Carica papaya evm.TU.supercontig_7.36 I 0.683
Ciclev10018130m.g Citrus clementina Ciclev10018130m.g I 0.683
Eucgr.E02652 Eucalyptus grandis Eucgr.E02652 I 0.683
Eucgr.E03167 Eucalyptus grandis Eucgr.E03167 I 0.683
TCM_029772 Theobroma cacao TCM_029772 I 0.683
orange1.1g037347m.g Citrus sinensis orange1.1g037347m.g I 0.683
PRUPE_ppa016384mg Prunus persica PRUPE_ppa016384mg I 0.683
Pm003579 Prunus mume Pm003579 I 0.683
GLYMA15G08580 Glycine max GLYMA15G08580 I 0.683
cassava3045.m1 Manihot esculenta cassava3045.m1 I 0.683
Pm019546 Prunus mume Pm019546 I 0.682
PRUPE_ppa010186mg Prunus persica PRUPE_ppa010186mg I 0.682
ERF2_TOBAC Nicotiana tabacum ERF2_TOBAC D 0.682
Eucgr.A02924 Eucalyptus grandis Eucgr.A02924 I 0.682
TCM_014845 Theobroma cacao TCM_014845 I 0.682
POPTR_0003s15030 Populus trichocarpa POPTR_0003s15030 I 0.682
gene28067-v1.0-hybrid Fragaria vesca gene28067-v1.0-hybrid I 0.682
POPTR_0004s05110 Populus trichocarpa POPTR_0004s05110 I 0.680
POPTR_0011s06020 Populus trichocarpa POPTR_0011s06020 I 0.680
Solyc05g052050.1 Solanum lycopersicum Solyc05g052050.1 I 0.680
PGSC0003DMG400016006 Solanum tuberosum PGSC0003DMG400016006 I 0.680
SapurV1A.0012s0900 Salix purpurea SapurV1A.0012s0900 I 0.680
MDP0000778140 Malus domestica MDP0000778140 I 0.679
PGSC0003DMG400014204 Solanum tuberosum PGSC0003DMG400014204 I 0.679
PGSC0003DMG400013402 Solanum tuberosum PGSC0003DMG400013402 I 0.679
Solyc02g077360.1 Solanum lycopersicum Solyc02g077360.1 I 0.679
LPERR05G14610 Leersia perrieri LPERR05G14610 I 0.679
Solyc03g005520.1 Solanum lycopersicum Solyc03g005520.1 I 0.679
gene16619-v1.0-hybrid Fragaria vesca gene16619-v1.0-hybrid I 0.679
SapurV1A.0012s0890 Salix purpurea SapurV1A.0012s0890 I 0.678
MDP0000789227 Malus domestica MDP0000789227 I 0.678
MDP0000880063 Malus domestica MDP0000880063 I 0.678
VIT_16s0013g00890 Vitis vinifera VIT_16s0013g00890 I 0.678
TCM_029773 Theobroma cacao TCM_029773 I 0.678
Lus10033885.g Linum usitatissimum Lus10033885.g I 0.678
Lus10003562.g Linum usitatissimum Lus10003562.g I 0.678
POPTR_0004s05100 Populus trichocarpa POPTR_0004s05100 I 0.678
LPERR03G35710 Leersia perrieri LPERR03G35710 I 0.677
Ca_15022 Cicer arietinum Ca_15022 I 0.677
30147.m014331 Ricinus communis 30147.m014331 I 0.677
e_gw1.265.11.1 Physcomitrella patens e_gw1.265.11.1 I 0.677
MLOC_78827 Hordeum vulgare MLOC_78827 I 0.677
evm.TU.supercontig_13.250 Carica papaya evm.TU.supercontig_13.250 I 0.677