PGSC0003DMG400015880 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400015880 T004424_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.720 0.796
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.706 0.633
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.706 0.633
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.706 0.633
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400041053 AP2 110 161

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.811
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.752
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.751
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.751
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.751
Cla008128 Citrullus lanatus Cla008128 I 0.742
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.742
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.732
PK24580.1 Cannabis sativa PK24580.1 D 0.720
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.719
Ca_05485 Cicer arietinum Ca_05485 I 0.712
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.710
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.710
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.709
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.709
ERF118 Arabidopsis thaliana AT1G68550 D 0.706
MDP0000119956 Malus domestica MDP0000119956 I 0.700
MDP0000743350 Malus domestica MDP0000743350 I 0.700
Pm029052 Prunus mume Pm029052 I 0.696
Cucsa.121430 Cucumis sativus Cucsa.121430 N 0.694
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.693
mgf006610m Mimulus guttatus mgf006610m I 0.689
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.688
MDP0000759299 Malus domestica MDP0000759299 I 0.685
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.685
Cla021763 Citrullus lanatus Cla021763 I 0.684
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.679
MDP0000166779 Malus domestica MDP0000166779 N 0.678