PGSC0003DMG400018054 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400018054 T004440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.761 0.837
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.761 0.837
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.682 0.776
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.682 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400046516 AP2 13 63

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.788
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.787
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.786
TCM_036269 Theobroma cacao TCM_036269 I 0.784
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.784
Cla012665 Citrullus lanatus Cla012665 I 0.781
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.778
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.776
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.771
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.769
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.768
Bra016136 Brassica rapa Bra016136 I 0.767
Bo6g113020 Brassica oleracea Bo6g113020 I 0.765
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.763
MDP0000283350 Malus domestica MDP0000283350 I 0.763
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.761
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.761
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.761
Bo2g072910 Brassica oleracea Bo2g072910 I 0.761
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.761
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.761
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.761
ERF021 Arabidopsis thaliana AT1G71450 D 0.761
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.758
Bra010210 Brassica rapa Bra010210 I 0.758
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.757
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.757
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.757
Pm004269 Prunus mume Pm004269 I 0.757
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.757
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.757
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.757
Pm004272 Prunus mume Pm004272 I 0.756
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.756
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.756
Bo8g027240 Brassica oleracea Bo8g027240 I 0.756
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.756
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.756
Bo5g086680 Brassica oleracea Bo5g086680 I 0.755
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.752
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.752
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.751
28118.m000034 Ricinus communis 28118.m000034 I 0.751
ERF022 Arabidopsis thaliana AT1G33760 I 0.751
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.750
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.750
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.750
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.749
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.749
MDP0000122740 Malus domestica MDP0000122740 I 0.748
MDP0000122739 Malus domestica MDP0000122739 I 0.748
MDP0000151428 Malus domestica MDP0000151428 I 0.748
Bra007975 Brassica rapa Bra007975 I 0.746
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.746
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.745
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.745
Cla012661 Citrullus lanatus Cla012661 I 0.744
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.744
TCM_036270 Theobroma cacao TCM_036270 I 0.742
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.739
Si026882m.g Setaria italica Si026882m.g I 0.739
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.738
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.738
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.737
Bra028009 Brassica rapa Bra028009 I 0.737
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.736
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.736
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.736
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.736
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.735
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.732
Bo6g046850 Brassica oleracea Bo6g046850 I 0.731
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.729
Bra003924 Brassica rapa Bra003924 I 0.728
Bo6g094210 Brassica oleracea Bo6g094210 I 0.728
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.727
27805.m000021 Ricinus communis 27805.m000021 I 0.725
Ca_15064 Cicer arietinum Ca_15064 I 0.723
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.723
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.722
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.722
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.720
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.719
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.719
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.719
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.719
OB11G16300 Oryza brachyantha OB11G16300 I 0.719
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.719
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.719
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.719
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.719
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.719
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.719
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.719
OS11G0242300 Oryza sativa OS11G0242300 I 0.719
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.719
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.719
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.719
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.719
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.719
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.719
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.719
F775_17299 Aegilops tauschii F775_17299 I 0.719
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.717
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.716
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.716
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.715
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.712
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.707
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.704
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.702
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.700
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.698
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.698
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.695
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.695
mgf020568m Mimulus guttatus mgf020568m I 0.695
TCM_005130 Theobroma cacao TCM_005130 I 0.695
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.693
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.693
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.691
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.689
Ca_01325 Cicer arietinum Ca_01325 I 0.688
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.688
Pm018354 Prunus mume Pm018354 I 0.687
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.687
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.686
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.686
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.685
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.685
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.685
PK15554.1 Cannabis sativa PK15554.1 I 0.685
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.684
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.684
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.683
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.682
ERF023 Arabidopsis thaliana AT1G01250 D 0.682
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.682
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.682
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.682
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.681
29742.m001400 Ricinus communis 29742.m001400 I 0.681
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.678
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.678
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.678
Bra032630 Brassica rapa Bra032630 I 0.678
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.678