PGSC0003DMG400023701 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400023701 T004456_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.748 0.882
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.748 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400060936 AP2 32 83

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.748
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.747
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.748
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.747
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.718
mgf023693m Mimulus guttatus mgf023693m I 0.702
mgf022810m Mimulus guttatus mgf022810m I 0.702
mgf022665m Mimulus guttatus mgf022665m I 0.748
mgf018851m Mimulus guttatus mgf018851m I 0.684
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.737
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.704
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.748
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.748
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.720
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.720
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.750
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.720
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.702
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.735
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.759
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.722
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.684
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.735
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.723
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.692
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.690
29635.m000461 Ricinus communis 29635.m000461 I 0.720
Pm025326 Prunus mume Pm025326 I 0.750
Pm015931 Prunus mume Pm015931 I 0.720
Pm008788 Prunus mume Pm008788 I 0.684
Pm000004 Prunus mume Pm000004 I 0.734
Cla021590 Citrullus lanatus Cla021590 I 0.704
Cla012318 Citrullus lanatus Cla012318 I 0.737
Cla010474 Citrullus lanatus Cla010474 I 0.723
Ca_10494 Cicer arietinum Ca_10494 I 0.720
29813.m001543 Ricinus communis 29813.m001543 I 0.722
30084.m000185 Ricinus communis 30084.m000185 I 0.748
30174.m008961 Ricinus communis 30174.m008961 I 0.681
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.739
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.716
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.722
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.678
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.684
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.688
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.757
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.723
30174.m009031 Ricinus communis 30174.m009031 I 0.690
Ca_08232 Cicer arietinum Ca_08232 I 0.750
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.750
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.723
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.740
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.745
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.680
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.720
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.722
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.735
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.684
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.735
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.723
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.723
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.723
PK25269.1 Cannabis sativa PK25269.1 I 0.694
PK13330.1 Cannabis sativa PK13330.1 I 0.720
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.748
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.684
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.747
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.750
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.720
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.776
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.723
MDP0000551969 Malus domestica MDP0000551969 I 0.720
MDP0000525933 Malus domestica MDP0000525933 I 0.734
MDP0000276536 Malus domestica MDP0000276536 I 0.720
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.723
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.735
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.723
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.750
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.704
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.722
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.684
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.720
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.734
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.691
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.696
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.710
MDP0000177547 Malus domestica MDP0000177547 I 0.750
MDP0000138669 Malus domestica MDP0000138669 I 0.684
MDP0000133476 Malus domestica MDP0000133476 I 0.684
MDP0000128326 Malus domestica MDP0000128326 I 0.683
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.684
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.699
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.718
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.718
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.684
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.684
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.749
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.720
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.720
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.697
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.689
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.683
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.749
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.749
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.720
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.720
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.691
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.718
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.750
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.720
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.685
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.749
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.720
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.749
OBART12G17080 Oryza barthii OBART12G17080 I 0.720
OBART07G06690 Oryza barthii OBART07G06690 I 0.749
OB09G23520 Oryza brachyantha OB09G23520 I 0.679
OB07G15030 Oryza brachyantha OB07G15030 I 0.749
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.677
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.723
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.750
Bra002262 Brassica rapa Bra002262 I 0.748
Bo9g152440 Brassica oleracea Bo9g152440 I 0.748
Bo3g013830 Brassica oleracea Bo3g013830 I 0.748
Bo2g018360 Brassica oleracea Bo2g018360 I 0.748
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.720
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.683
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.749
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.682
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.749
Bra006518 Brassica rapa Bra006518 I 0.748
Bra020063 Brassica rapa Bra020063 I 0.748
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.685
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.720
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.720
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.723
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.689
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.750
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.720
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.689
F775_04303 Aegilops tauschii F775_04303 I 0.681
F775_02727 Aegilops tauschii F775_02727 I 0.720
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.681
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.720
Si038848m.g Setaria italica Si038848m.g I 0.720
Si033237m.g Setaria italica Si033237m.g I 0.745
Si032213m.g Setaria italica Si032213m.g I 0.680
Si024417m.g Setaria italica Si024417m.g I 0.723
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.695
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.695
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.748
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.720
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.745
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.693
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.681
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.721
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.750
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.702
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.720
TCM_040015 Theobroma cacao TCM_040015 I 0.749
TCM_025913 Theobroma cacao TCM_025913 I 0.750
TCM_018659 Theobroma cacao TCM_018659 I 0.720
TCM_011632 Theobroma cacao TCM_011632 I 0.722
TCM_005425 Theobroma cacao TCM_005425 I 0.684
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.814
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.723
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.734
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.720
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.720
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.685
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.749
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.720
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.749
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.720
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.685
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.743
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.720
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.683
OS07G0204000 Oryza sativa OS07G0204000 I 0.749
OS12G0582900 Oryza sativa OS12G0582900 I 0.720
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.684
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.750
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.720
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.684
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.714
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.750
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.750
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.723
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.681
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.720
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.682