PGSC0003DMG400025151 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400025151 T004461_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.805 0.882
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.805 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400064752 AP2 25 76

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.805
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.686
mgf018851m Mimulus guttatus mgf018851m I 0.734
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.680
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.680
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.792
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.741
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.811
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.735
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.723
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.738
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.818
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.810
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.812
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.726
mgf022665m Mimulus guttatus mgf022665m I 0.803
mgf022810m Mimulus guttatus mgf022810m I 0.781
mgf023693m Mimulus guttatus mgf023693m I 0.781
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.797
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.812
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.734
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.705
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.792
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.814
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.805
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.805
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.805
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.727
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.690
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.801
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.806
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.734
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.727
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.799
Ca_16397 Cicer arietinum Ca_16397 I 0.714
Ca_10494 Cicer arietinum Ca_10494 I 0.814
Ca_08232 Cicer arietinum Ca_08232 I 0.805
Ca_00417 Cicer arietinum Ca_00417 I 0.714
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.698
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.814
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.805
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.771
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.814
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.696
TCM_040015 Theobroma cacao TCM_040015 I 0.805
TCM_025913 Theobroma cacao TCM_025913 I 0.805
TCM_018659 Theobroma cacao TCM_018659 I 0.814
Ca_25424 Cicer arietinum Ca_25424 I 0.724
Cla010474 Citrullus lanatus Cla010474 I 0.811
Cla012318 Citrullus lanatus Cla012318 I 0.792
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.811
30174.m009031 Ricinus communis 30174.m009031 I 0.744
30174.m008961 Ricinus communis 30174.m008961 I 0.731
30084.m000185 Ricinus communis 30084.m000185 I 0.805
30068.m002623 Ricinus communis 30068.m002623 I 0.694
29813.m001543 Ricinus communis 29813.m001543 I 0.812
29635.m000461 Ricinus communis 29635.m000461 I 0.814
Pm030235 Prunus mume Pm030235 I 0.718
Pm025326 Prunus mume Pm025326 I 0.805
Pm015931 Prunus mume Pm015931 I 0.814
Pm008788 Prunus mume Pm008788 I 0.734
Pm000004 Prunus mume Pm000004 I 0.755
Cla021590 Citrullus lanatus Cla021590 I 0.741
TCM_015579 Theobroma cacao TCM_015579 I 0.705
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.817
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.805
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.803
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.808
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.736
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.692
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.814
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.812
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.792
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.734
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.792
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.705
MDP0000551969 Malus domestica MDP0000551969 I 0.814
MDP0000525933 Malus domestica MDP0000525933 I 0.755
MDP0000276536 Malus domestica MDP0000276536 I 0.814
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.811
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.811
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.811
PK28640.1 Cannabis sativa PK28640.1 I 0.701
PK25269.1 Cannabis sativa PK25269.1 I 0.752
PK13330.1 Cannabis sativa PK13330.1 I 0.814
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.805
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.734
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.796
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.805
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.703
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.814
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.779
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.811
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.811
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.692
MDP0000177547 Malus domestica MDP0000177547 I 0.805
MDP0000157628 Malus domestica MDP0000157628 I 0.718
MDP0000138669 Malus domestica MDP0000138669 I 0.734
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.776
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.734
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.742
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.814
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.791
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.734
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.802
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.814
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.697
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.805
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.718
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.814
MDP0000197375 Malus domestica MDP0000197375 I 0.718
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.705
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.758
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.805
MDP0000133476 Malus domestica MDP0000133476 I 0.734
MDP0000128326 Malus domestica MDP0000128326 I 0.756
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.733
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.746
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.809
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.809
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.734
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.791
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.743
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.747
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.811
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.792
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.811
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.797
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.696
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.814
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.696
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.754
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.778
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.728
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.713
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.805
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.805
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.814
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.718
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.694
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.814
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.740
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.730
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.719
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.814
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.805
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.814
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.728
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.696
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.805
OBART12G17080 Oryza barthii OBART12G17080 I 0.814
OBART07G19610 Oryza barthii OBART07G19610 I 0.696
OBART07G06690 Oryza barthii OBART07G06690 I 0.805
OB09G23520 Oryza brachyantha OB09G23520 I 0.736
OB07G15030 Oryza brachyantha OB07G15030 I 0.805
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.714
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.805
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.806
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.724
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.695
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.811
Bra020063 Brassica rapa Bra020063 I 0.805
Bra006518 Brassica rapa Bra006518 I 0.805
Bra002262 Brassica rapa Bra002262 I 0.805
Bo9g152440 Brassica oleracea Bo9g152440 I 0.805
Bo3g013830 Brassica oleracea Bo3g013830 I 0.805
Bo2g018360 Brassica oleracea Bo2g018360 I 0.805
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.814
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.739
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.805
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.696
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.735
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.803
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.776
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.712
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.754
F775_02727 Aegilops tauschii F775_02727 I 0.814
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.805
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.702
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.814
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.814
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.823
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.691
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.708
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.805
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.810
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.714
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.691
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.714
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.708
F775_04303 Aegilops tauschii F775_04303 I 0.775
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.697
TCM_014471 Theobroma cacao TCM_014471 I 0.715
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.685
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.805
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.814
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.730
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.808
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.811
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.755
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.814
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.734
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.718
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.805
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.703
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.814
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.684
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.734
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.769
TCM_011632 Theobroma cacao TCM_011632 I 0.776
TCM_005425 Theobroma cacao TCM_005425 I 0.734
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.723
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.818
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.737
Si038848m.g Setaria italica Si038848m.g I 0.814
Si033237m.g Setaria italica Si033237m.g I 0.808
Si032213m.g Setaria italica Si032213m.g I 0.736
Si030686m.g Setaria italica Si030686m.g I 0.692
Si027288m.g Setaria italica Si027288m.g I 0.695
Si024417m.g Setaria italica Si024417m.g I 0.811
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.769
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.774
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.710
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.759
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.805
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.814
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.696
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.805
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.814
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.741
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.696
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.800
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.814
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.739
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.696
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.805
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.814
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.741
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.696
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.723
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.805
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.706
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.737
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.814
OS12G0582900 Oryza sativa OS12G0582900 I 0.814
OS07G0575000 Oryza sativa OS07G0575000 I 0.696
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.805
OS07G0204000 Oryza sativa OS07G0204000 I 0.805
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.814
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.741
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.805
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.682
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.692
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.686
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.685
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.683
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.684
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.685
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.692
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.685