PGSC0003DMG400034101 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400034101 T004492_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.771 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.771 0.920
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.766 0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.766 0.900
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.765 0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.764 0.860
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.764 0.860
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.762 0.900
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.762 0.900
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.762 0.900
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.762 0.900
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.727 0.840
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.727 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400084506 AP2 33 84

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.765
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.727
ERF008 Arabidopsis thaliana AT2G23340 D 0.762
ERF011 Arabidopsis thaliana AT3G50260 D 0.764
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.771
ERF010 Arabidopsis thaliana AT5G67190 D 0.766
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.744
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.760
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.765
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.765
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.772
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.766
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.767
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.769
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.766
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.764
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.766
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.765
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.764
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.772
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.765
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.765
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.765
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.772
mgf025363m Mimulus guttatus mgf025363m I 0.742
mgf021115m Mimulus guttatus mgf021115m I 0.790
mgf006561m Mimulus guttatus mgf006561m I 0.784
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.725
Ca_01556 Cicer arietinum Ca_01556 I 0.720
Ca_02170 Cicer arietinum Ca_02170 I 0.776
Cla014175 Citrullus lanatus Cla014175 I 0.764
Cla020550 Citrullus lanatus Cla020550 I 0.739
Cla020961 Citrullus lanatus Cla020961 I 0.782
Cla022937 Citrullus lanatus Cla022937 I 0.776
28718.m000038 Ricinus communis 28718.m000038 I 0.776
30170.m013843 Ricinus communis 30170.m013843 I 0.767
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.778
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.767
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.767
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.764
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.782
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.739
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.776
mgf000289m Mimulus guttatus mgf000289m I 0.755
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.765
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.788
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.746
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.756
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.746
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.756
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.769
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.767
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.778
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.764
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.764
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.767
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.729
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.766
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.765
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.781
PK15612.1 Cannabis sativa PK15612.1 I 0.773
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.778
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.715
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.788
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.778
MDP0000756341 Malus domestica MDP0000756341 I 0.776
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.778
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.780
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.766
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.766
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.778
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.776
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.777
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.778
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.770
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.778
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.782
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.770
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.750
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.769
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.767
MDP0000125673 Malus domestica MDP0000125673 I 0.777
MDP0000179962 Malus domestica MDP0000179962 I 0.777
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.760
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.689
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.771
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.778
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.754
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.776
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.754
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.778
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.782
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.764
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.776
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.723
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.746
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.720
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.746
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.758
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.749
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.756
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.742
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.764
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.765
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.746
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.746
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.746
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.756
Bo1g004940 Brassica oleracea Bo1g004940 I 0.778
Bo4g151460 Brassica oleracea Bo4g151460 I 0.765
Bo7g063980 Brassica oleracea Bo7g063980 I 0.766
Bo7g118430 Brassica oleracea Bo7g118430 I 0.765
Bo8g079660 Brassica oleracea Bo8g079660 I 0.766
Bo9g020380 Brassica oleracea Bo9g020380 I 0.760
Bra011744 Brassica rapa Bra011744 I 0.778
Bra012140 Brassica rapa Bra012140 I 0.755
Bra014056 Brassica rapa Bra014056 I 0.782
Bra017811 Brassica rapa Bra017811 I 0.765
Bra032173 Brassica rapa Bra032173 I 0.765
Bra036061 Brassica rapa Bra036061 I 0.766
Bra037124 Brassica rapa Bra037124 I 0.760
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.756
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.750
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.737
OS06G0166400 Oryza sativa OS06G0166400 I 0.756
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.791
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.755
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.767
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.778
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.778
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.767
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.782
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.775
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.746
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.756
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.729
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.765
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.766
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.755
TCM_000669 Theobroma cacao TCM_000669 I 0.778
TCM_033791 Theobroma cacao TCM_033791 I 0.780
OS04G0648900 Oryza sativa OS04G0648900 I 0.746
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.756
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.756
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.749
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.752
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.769
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.746
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.756
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.745
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.761
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.720
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.776
OBART06G04460 Oryza barthii OBART06G04460 I 0.756
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.746
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.756
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.746
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.746
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.756
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.756
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.746
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.745