PGSC0003DMG400041863 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400041863 T004514_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.706 0.846
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.677 0.712
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.677 0.712
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.677 0.712
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.677 0.673
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.677 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400092292 AP2 70 122

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf020623m Mimulus guttatus mgf020623m I 0.725
Cagra.1671s0247 Capsella grandiflora Cagra.1671s0247 I 0.723
Carubv10010105m.g Capsella rubella Carubv10010105m.g I 0.723
Bostr.25219s0341 Boechera stricta Bostr.25219s0341 I 0.723
Bo5g007280 Brassica oleracea Bo5g007280 I 0.722
Bo8g114710 Brassica oleracea Bo8g114710 I 0.722
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.722
Solyc11g011750.1 Solanum lycopersicum Solyc11g011750.1 I 0.713
Bra015478 Brassica rapa Bra015478 I 0.711
Thhalv10008518m.g Eutrema salsugineum Thhalv10008518m.g I 0.709
mgf021081m Mimulus guttatus mgf021081m I 0.708
ORA59 Arabidopsis lyrata fgenesh2_kg.1__587__AT1G06160.1 I 0.707
Q5Y836_TOBAC Nicotiana tabacum Q5Y836_TOBAC D 0.706
PGSC0003DMG400013257 Solanum tuberosum PGSC0003DMG400013257 I 0.703
AMTR_s00021p00185480 Amborella trichopoda AMTR_s00021p00185480 I 0.699
Ciclev10023393m.g Citrus clementina Ciclev10023393m.g I 0.692
MTR_1g048610 Medicago truncatula MTR_1g048610 I 0.691
AMTR_s00021p00184450 Amborella trichopoda AMTR_s00021p00184450 I 0.690
POPTR_0004s05100 Populus trichocarpa POPTR_0004s05100 I 0.688
SapurV1A.0012s0890 Salix purpurea SapurV1A.0012s0890 I 0.688
cassava1608.valid.m1 Manihot esculenta cassava1608.valid.m1 I 0.683
Aquca_005_00139 Aquilegia coerulea Aquca_005_00139 I 0.683
PGSC0003DMG400013256 Solanum tuberosum PGSC0003DMG400013256 I 0.683
Solyc04g014530.1 Solanum lycopersicum Solyc04g014530.1 I 0.682
PGSC0003DMG400023619 Solanum tuberosum PGSC0003DMG400023619 I 0.682
CM1489.100.nc Lotus japonicus CM1489.100.nc I 0.681
Solyc11g011740.1 Solanum lycopersicum Solyc11g011740.1 I 0.681
PGSC0003DMG400013255 Solanum tuberosum PGSC0003DMG400013255 I 0.681
GLYMA13G30710 Glycine max GLYMA13G30710 I 0.681
orange1.1g037347m.g Citrus sinensis orange1.1g037347m.g I 0.680
GLYMA10G23440 Glycine max GLYMA10G23440 I 0.680
Ciclev10018130m.g Citrus clementina Ciclev10018130m.g I 0.680
Eucgr.E02652 Eucalyptus grandis Eucgr.E02652 I 0.680
Eucgr.E03167 Eucalyptus grandis Eucgr.E03167 I 0.680
PDK_20s1757341g001 Phoenix dactylifera PDK_20s1757341g001 I 0.680
PK23186.1 Cannabis sativa PK23186.1 I 0.680
cassava3045.m1 Manihot esculenta cassava3045.m1 I 0.680
TCM_029772 Theobroma cacao TCM_029772 I 0.680
evm.TU.supercontig_7.36 Carica papaya evm.TU.supercontig_7.36 I 0.680
GLYMA20G16910 Glycine max GLYMA20G16910 I 0.680
GLYMA15G08580 Glycine max GLYMA15G08580 I 0.680
CM0905.90.nd Lotus japonicus CM0905.90.nd I 0.679
Bra032433 Brassica rapa Bra032433 I 0.679
fgenesh2_kg.8__1005__AT5G51190.1 Arabidopsis lyrata fgenesh2_kg.8__1005__AT5G51190.1 I 0.679
Thhalv10014591m.g Eutrema salsugineum Thhalv10014591m.g I 0.678
Carubv10027063m.g Capsella rubella Carubv10027063m.g I 0.678
Solyc05g051200.1 Solanum lycopersicum Solyc05g051200.1 I 0.678
VIT_16s0013g00900 Vitis vinifera VIT_16s0013g00900 I 0.678
Q8LGR8_SOLLC Solanum lycopersicum Q8LGR8_SOLLC I 0.678
ERF105 Arabidopsis thaliana AT5G51190 D 0.677
Bra035732 Brassica rapa Bra035732 I 0.677
Bo9g100030 Brassica oleracea Bo9g100030 I 0.677
ERF104 Arabidopsis thaliana AT5G61600 D 0.677
Bostr.15774s0261 Boechera stricta Bostr.15774s0261 I 0.677