POPTR_0001s18800 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0001s18800 T004584_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.725 0.860
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.704 0.860
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.704 0.860
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.704 0.860
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.689 0.840
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.689 0.840
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.685 0.840
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.685 0.840
AT3G16280
M06618_2.00 		Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
AT3G16280_col_a 		0.680 0.840
AT3G16280
M06619_2.00 		Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV		 Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a 		0.680 0.840
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.680 0.880
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.680 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s18800.1 AP2 53 104

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0003s04920 Populus trichocarpa POPTR_0003s04920 I 0.802
SapurV1A.2848s0020 Salix purpurea SapurV1A.2848s0020 I 0.799
SapurV1A.0370s0130 Salix purpurea SapurV1A.0370s0130 I 0.799
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.789
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.752
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.750
Cla012859 Citrullus lanatus Cla012859 I 0.750
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.749
Cucsa.312570 Cucumis sativus Cucsa.312570 I 0.746
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.742
Cla023465 Citrullus lanatus Cla023465 I 0.739
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.738
F775_11989 Aegilops tauschii F775_11989 I 0.738
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.738
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.737
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.737
Cla015715 Citrullus lanatus Cla015715 I 0.736
GSMUA_Achr10G14070_001 Musa acuminata GSMUA_Achr10G14070_001 I 0.733
OGLUM10G18570 Oryza glumaepatula OGLUM10G18570 I 0.732
OPUNC10G16830 Oryza punctata OPUNC10G16830 I 0.732
ORGLA10G0136200 Oryza glaberrima ORGLA10G0136200 I 0.732
ONIVA10G21000 Oryza nivara ONIVA10G21000 I 0.732
OMERI08G00520 Oryza meridionalis OMERI08G00520 I 0.732
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.731
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.729
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.729
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.726
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.726
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.726
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.726
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.726
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.726
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.726
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.726
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.726
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.726
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.726
Si010703m.g Setaria italica Si010703m.g I 0.726
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.726
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.726
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.726
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.726
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.726
OS04G0549700 Oryza sativa OS04G0549700 I 0.726
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.726
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.726
OS02G0656600 Oryza sativa OS02G0656600 I 0.726
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.725
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.725
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.725
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.725
Si039427m.g Setaria italica Si039427m.g I 0.725
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.725
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I 0.721
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.719
LPERR10G14320 Leersia perrieri LPERR10G14320 I 0.719
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I 0.719
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I 0.719
TCM_028851 Theobroma cacao TCM_028851 I 0.718
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.717
Bra036552 Brassica rapa Bra036552 I 0.717
Bo9g011210 Brassica oleracea Bo9g011210 I 0.717
Gorai.010G075300 Gossypium raimondii Gorai.010G075300 I 0.716
Gorai.001G008100 Gossypium raimondii Gorai.001G008100 I 0.716
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.716
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.716
GRMZM5G806839 Zea mays GRMZM5G806839 I 0.716
GLYMA01G13410 Glycine max GLYMA01G13410 I 0.715
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I 0.713
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.713
Cla004187 Citrullus lanatus Cla004187 I 0.713
mgf022802m Mimulus guttatus mgf022802m I 0.713
Bo6g077080 Brassica oleracea Bo6g077080 I 0.712
BRADI3G33355 Brachypodium distachyon BRADI3G33355 I 0.712
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.712
Bra003415 Brassica rapa Bra003415 I 0.712
ORGLA01G0061000 Oryza glaberrima ORGLA01G0061000 I 0.711
OPUNC01G06210 Oryza punctata OPUNC01G06210 I 0.711
Bra037041 Brassica rapa Bra037041 I 0.711
ORUFI01G06970 Oryza rufipogon ORUFI01G06970 I 0.711
OS01G0200600 Oryza sativa OS01G0200600 I 0.711
Sb03g002630 Sorghum bicolor Sb03g002630 I 0.711
Pavir.Eb00249 Panicum virgatum Pavir.Eb00249 I 0.711
Cucsa.121080 Cucumis sativus Cucsa.121080 I 0.711
OBART01G06440 Oryza barthii OBART01G06440 I 0.711
OGLUM01G07430 Oryza glumaepatula OGLUM01G07430 I 0.711
Si002749m.g Setaria italica Si002749m.g I 0.711
OMERI01G06530 Oryza meridionalis OMERI01G06530 I 0.711
Bo3g171090 Brassica oleracea Bo3g171090 I 0.710
Bra034535 Brassica rapa Bra034535 I 0.710
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.710
Bo7g115860 Brassica oleracea Bo7g115860 I 0.710
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.710
GLYMA05G35741 Glycine max GLYMA05G35741 I 0.709
gene11882-v1.0-hybrid Fragaria vesca gene11882-v1.0-hybrid I 0.709
MTR_8g102800 Medicago truncatula MTR_8g102800 I 0.709
Ca_05941 Cicer arietinum Ca_05941 I 0.709
GLYMA08G03910 Glycine max GLYMA08G03910 I 0.709
mgf022971m Mimulus guttatus mgf022971m I 0.709
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.708
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.708
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.707
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.707
ORUFI06G19350 Oryza rufipogon ORUFI06G19350 I 0.707
F775_14820 Aegilops tauschii F775_14820 I 0.707
BRADI1G38110 Brachypodium distachyon BRADI1G38110 I 0.707
Bra007539 Brassica rapa Bra007539 I 0.707
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.707
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.707
Si007144m.g Setaria italica Si007144m.g I 0.707
ONIVA06G21640 Oryza nivara ONIVA06G21640 I 0.707
chr4.CM0617.510.nd Lotus japonicus chr4.CM0617.510.nd I 0.707
OMERI06G18780 Oryza meridionalis OMERI06G18780 I 0.707
Bo8g095240 Brassica oleracea Bo8g095240 I 0.707
GRMZM2G073047 Zea mays GRMZM2G073047 I 0.706
30146.m003535 Ricinus communis 30146.m003535 I 0.706
mgf019024m Mimulus guttatus mgf019024m I 0.706
ONIVA01G08000 Oryza nivara ONIVA01G08000 I 0.705
BGIOSGA002184 Oryza indica BGIOSGA002184 I 0.705
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.704
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.704
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.704
ERF043 Arabidopsis thaliana AT4G32800 D 0.704
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.704
GSMUA_Achr2G09430_001 Musa acuminata GSMUA_Achr2G09430_001 I 0.703
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.702
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.702
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.702
GRMZM2G047918 Zea mays GRMZM2G047918 I 0.701
OGLUM02G09810 Oryza glumaepatula OGLUM02G09810 I 0.701
GSMUA_Achr6G26280_001 Musa acuminata GSMUA_Achr6G26280_001 I 0.701
Si018188m.g Setaria italica Si018188m.g I 0.701
OPUNC02G08670 Oryza punctata OPUNC02G08670 I 0.701
BRADI3G08790 Brachypodium distachyon BRADI3G08790 I 0.701
ORUFI02G09750 Oryza rufipogon ORUFI02G09750 I 0.701
Pavir.Ab00844 Panicum virgatum Pavir.Ab00844 I 0.701
ORGLA02G0087100 Oryza glaberrima ORGLA02G0087100 I 0.701
LPERR06G15020 Leersia perrieri LPERR06G15020 I 0.701
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.701
ONIVA02G10590 Oryza nivara ONIVA02G10590 I 0.701
OMERI02G10950 Oryza meridionalis OMERI02G10950 I 0.701
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.700
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.700
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.700
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.699
Si017865m.g Setaria italica Si017865m.g I 0.699
AC187157.4_FG001 Zea mays AC187157.4_FG001 I 0.699
Sb04g032940 Sorghum bicolor Sb04g032940 I 0.699
Si019772m.g Setaria italica Si019772m.g I 0.699
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.699
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I 0.699
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.699
GRMZM5G816314 Zea mays GRMZM5G816314 I 0.699
GRMZM2G072926 Zea mays GRMZM2G072926 I 0.699
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I 0.699
OB06G25840 Oryza brachyantha OB06G25840 I 0.698
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.698
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I 0.698
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.696
GSMUA_Achr9G05860_001 Musa acuminata GSMUA_Achr9G05860_001 I 0.696
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.695
SELMODRAFT_71659 Selaginella moellendorffii SELMODRAFT_71659 I 0.693
SELMODRAFT_71661 Selaginella moellendorffii SELMODRAFT_71661 I 0.693
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.692
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.692
orange1.1g041015m.g Citrus sinensis orange1.1g041015m.g I 0.691
Bra034273 Brassica rapa Bra034273 I 0.691
Ciclev10006536m.g Citrus clementina Ciclev10006536m.g I 0.691
30174.m008790 Ricinus communis 30174.m008790 I 0.691
ERF042 Arabidopsis thaliana AT2G25820 I 0.691
Cla017050 Citrullus lanatus Cla017050 I 0.690
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.690
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.690
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.690
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.690
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.690
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.689
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.689
ERF034 Arabidopsis thaliana AT2G44940 D 0.689
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.689
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.689
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.689
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.689
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.688
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.688
Pm017610 Prunus mume Pm017610 I 0.688
TCM_005639 Theobroma cacao TCM_005639 I 0.688
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.688
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.688
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.688
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.688
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.687
Pm013463 Prunus mume Pm013463 I 0.686
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.686
Bo1g009990 Brassica oleracea Bo1g009990 I 0.685
ERF035 Arabidopsis thaliana AT3G60490 D 0.685
Bra011383 Brassica rapa Bra011383 I 0.685
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.685
Bra027177 Brassica rapa Bra027177 I 0.684
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.684
scaffold_301905.1 Arabidopsis lyrata scaffold_301905.1 I 0.684
Cagra.6624s0013 Capsella grandiflora Cagra.6624s0013 I 0.684
Bo5g126280 Brassica oleracea Bo5g126280 I 0.684
Carubv10014506m.g Capsella rubella Carubv10014506m.g I 0.684
Thhalv10022278m.g Eutrema salsugineum Thhalv10022278m.g I 0.684
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.683
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.683
mgf024816m Mimulus guttatus mgf024816m I 0.683
Bra004878 Brassica rapa Bra004878 I 0.683
Bra040333 Brassica rapa Bra040333 I 0.683
TCM_014892 Theobroma cacao TCM_014892 I 0.683
Bo4g024220 Brassica oleracea Bo4g024220 I 0.683
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.683
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.683
Bo4g195280 Brassica oleracea Bo4g195280 I 0.683
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.682
Bostr.26326s0067 Boechera stricta Bostr.26326s0067 I 0.681
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.681
Bo7g095710 Brassica oleracea Bo7g095710 I 0.680
Bra009862 Brassica rapa Bra009862 I 0.680
TINY Arabidopsis thaliana AT5G25810 D 0.680
AT3G16280 Arabidopsis thaliana AT3G16280 D 0.680
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.680
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.680
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.680
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.680
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.680
BRADI2G06180 Brachypodium distachyon BRADI2G06180 I 0.679
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.678
OPUNC06G16400 Oryza punctata OPUNC06G16400 I 0.678
Gorai.006G097000 Gossypium raimondii Gorai.006G097000 I 0.678
Pm023417 Prunus mume Pm023417 I 0.678
PK28082.1 Cannabis sativa PK28082.1 I 0.677
Al_scaffold_0004_2818 Arabidopsis lyrata Al_scaffold_0004_2818 I 0.677
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.677
Pm005151 Prunus mume Pm005151 I 0.677
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.677
29794.m003381 Ricinus communis 29794.m003381 I 0.677
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.677
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.677
Al_scaffold_0006_1828 Arabidopsis lyrata Al_scaffold_0006_1828 I 0.677
Sb04g032960 Sorghum bicolor Sb04g032960 I 0.677
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.677
MDP0000242611 Malus domestica MDP0000242611 I 0.677
MDP0000241650 Malus domestica MDP0000241650 I 0.677
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.677
GRMZM5G842961 Zea mays GRMZM5G842961 I 0.677
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.677
Si017995m.g Setaria italica Si017995m.g I 0.677
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.677
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.677
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.677
TCM_037194 Theobroma cacao TCM_037194 I 0.677