POPTR_0001s18800 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0001s18800 T004584_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.725 0.860
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.704 0.860
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.704 0.860
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.704 0.860
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.689 0.840
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.689 0.840
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.685 0.840
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.685 0.840
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.680 0.840
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.680 0.840
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN

NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.680 0.880
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN

NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.680 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s18800.1 AP2 53 104

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29681.m001315 Ricinus communis 29681.m001315 N 0.000
29917.m001977 Ricinus communis 29917.m001977 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
MYB98 Arabidopsis thaliana AT4G18770 D 0.000
MYB64 Arabidopsis thaliana AT5G11050 N 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.000
Bo1g019910 Brassica oleracea Bo1g019910 I 0.000
Bo2g028290 Brassica oleracea Bo2g028290 I 0.000
Bo3g018490 Brassica oleracea Bo3g018490 I 0.000
Bo3g157300 Brassica oleracea Bo3g157300 I 0.000
Bo7g106240 Brassica oleracea Bo7g106240 I 0.000
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.000
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.000
Bra006744 Brassica rapa Bra006744 I 0.000
Bra012579 Brassica rapa Bra012579 I 0.000
Bra013346 Brassica rapa Bra013346 I 0.000
Bra020346 Brassica rapa Bra020346 I 0.000
Bra020992 Brassica rapa Bra020992 I 0.000
Bra025299 Brassica rapa Bra025299 I 0.000
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.000
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.000
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.000
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.000
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.000
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.000
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
Ca_07482 Cicer arietinum Ca_07482 I 0.000
Ca_17087 Cicer arietinum Ca_17087 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Ca_19427 Cicer arietinum Ca_19427 I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
F775_22212 Aegilops tauschii F775_22212 I 0.000
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.000
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.000
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.000
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.000
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.000
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.000
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.000
Lus10013084.g Linum usitatissimum Lus10013084.g N 0.000
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.000
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.000
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
mgf024290m Mimulus guttatus mgf024290m I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.000
MTR_4g088015 Medicago truncatula MTR_4g088015 I 0.000
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.000
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.000
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
OB12G14410 Oryza brachyantha OB12G14410 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OBART12G04480 Oryza barthii OBART12G04480 I 0.000
OBART12G04500 Oryza barthii OBART12G04500 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.000
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.000
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
TCM_041651 Theobroma cacao TCM_041651 N 0.000
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.000
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.000
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.000
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.000
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.000
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000