POPTR_0001s36610 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0001s36610 T004587_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.736 0.851
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.736 0.851
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.736 0.851
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.726 0.830
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.726 0.830
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.726 0.830
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.715 0.830
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.680 0.702
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.680 0.702
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.680 0.702
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.678 0.787
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.678 0.787
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.678 0.787
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s36610.1 AP2 29 80

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.812
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.812
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.810
PK25211.1 Cannabis sativa PK25211.1 I 0.809
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.806
29640.m000403 Ricinus communis 29640.m000403 I 0.804
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.802
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.801
Pm014953 Prunus mume Pm014953 I 0.800
mgf016282m Mimulus guttatus mgf016282m I 0.800
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.800
MDP0000839828 Malus domestica MDP0000839828 I 0.800
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.800
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.799
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.799
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.799
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.799
mgf007166m Mimulus guttatus mgf007166m I 0.799
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.799
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.797
MDP0000542633 Malus domestica MDP0000542633 I 0.794
Pm011907 Prunus mume Pm011907 I 0.794
MDP0000629527 Malus domestica MDP0000629527 I 0.794
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.789
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.787
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.782
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.782
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.781
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.778
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.776
MDP0000243113 Malus domestica MDP0000243113 I 0.773
MDP0000744693 Malus domestica MDP0000744693 I 0.773
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.772
Bo6g022410 Brassica oleracea Bo6g022410 I 0.772
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.771
Cla005423 Citrullus lanatus Cla005423 I 0.770
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.765
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.764
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.764
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.761
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.761
TCM_030804 Theobroma cacao TCM_030804 I 0.760
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.759
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.756
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.754
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.754
Cla003319 Citrullus lanatus Cla003319 I 0.754
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.751
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.749
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.749
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.747
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.747
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.747
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.747
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.747
Cla013723 Citrullus lanatus Cla013723 I 0.746
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.745
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.744
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.744
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.742
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.742
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.741
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.741
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.741
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.741
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.741
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.740
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.740
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.738
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.738
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.738
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.738
ERF3 Arabidopsis thaliana AT1G50640 D 0.736
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.734
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.733
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.732
Bra018864 Brassica rapa Bra018864 I 0.731
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.730
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.729
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.728
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.727
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.726
ERF7 Arabidopsis thaliana AT3G20310 D 0.726
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.725
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.724
Ca_17824 Cicer arietinum Ca_17824 I 0.723
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.722
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.722
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.722
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.722
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.721
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.720
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.718
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.718
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.718
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.718
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.718
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.716
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.715
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.715
Ca_00326 Cicer arietinum Ca_00326 I 0.715
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.715
PK17878.1 Cannabis sativa PK17878.1 D 0.715
PK02998.1 Cannabis sativa PK02998.1 I 0.715
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.715
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.715
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.715
mgf023367m Mimulus guttatus mgf023367m I 0.715
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.715
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.715
Pm010083 Prunus mume Pm010083 I 0.715
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.715
30190.m011323 Ricinus communis 30190.m011323 I 0.715
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.715
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.715
Ca_12205 Cicer arietinum Ca_12205 I 0.715
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.715
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.715
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.715
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.715
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.715
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.715
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.715
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.715
TCM_029823 Theobroma cacao TCM_029823 I 0.715
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.715
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.713
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.713
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.712
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.712
Cla020002 Citrullus lanatus Cla020002 I 0.712
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.712
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.712
TRAES3BF075600040CFD_g Triticum aestivum TRAES3BF075600040CFD_g I 0.709
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.709
BRADI2G52380 Brachypodium distachyon BRADI2G52380 I 0.709
Si003053m.g Setaria italica Si003053m.g I 0.709
Pm020210 Prunus mume Pm020210 I 0.709
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.708
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.708
MLOC_66843 Hordeum vulgare MLOC_66843 I 0.708
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.707
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.706
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.706
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.705
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.704
Bra001784 Brassica rapa Bra001784 I 0.704
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.704
Bo3g074840 Brassica oleracea Bo3g074840 I 0.704
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.703
ERF12 Arabidopsis thaliana AT1G28360 I 0.702
Carubv10011585m.g Capsella rubella Carubv10011585m.g I 0.702
Cagra.1822s0023 Capsella grandiflora Cagra.1822s0023 I 0.702
Bra030094 Brassica rapa Bra030094 I 0.702
Thhalv10009947m.g Eutrema salsugineum Thhalv10009947m.g I 0.702
Bostr.15697s0156 Boechera stricta Bostr.15697s0156 I 0.702
Bo7g048190 Brassica oleracea Bo7g048190 I 0.702
ERF12 Arabidopsis lyrata fgenesh2_kg.1__3004__AT1G28360.1 I 0.702
Bo3g143340 Brassica oleracea Bo3g143340 I 0.702
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.702
Bo5g055840 Brassica oleracea Bo5g055840 I 0.702
Bra032898 Brassica rapa Bra032898 I 0.702
Bra010881 Brassica rapa Bra010881 I 0.702
MDP0000457509 Malus domestica MDP0000457509 I 0.698
MDP0000310904 Malus domestica MDP0000310904 I 0.698
MDP0000236605 Malus domestica MDP0000236605 I 0.698
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.696
Pavir.Ea03148 Panicum virgatum Pavir.Ea03148 I 0.696
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.696
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.696
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.696
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.695
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.695
Bra038261 Brassica rapa Bra038261 I 0.692
Bo1g108970 Brassica oleracea Bo1g108970 I 0.692
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.692
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.691
AMTR_s00077p00176570 Amborella trichopoda AMTR_s00077p00176570 I 0.691
Lus10035076.g Linum usitatissimum Lus10035076.g I 0.690
SELMODRAFT_59974 Selaginella moellendorffii SELMODRAFT_59974 I 0.689
SELMODRAFT_19889 Selaginella moellendorffii SELMODRAFT_19889 I 0.689
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I 0.689
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.688
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.688
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.688
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.688
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.688
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.687
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.687
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.687
Bra001588 Brassica rapa Bra001588 I 0.687
27904.m000217 Ricinus communis 27904.m000217 I 0.687
fgenesh1_pg.scaffold_6000034 Physcomitrella patens fgenesh1_pg.scaffold_6000034 I 0.687
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.687
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.687
TCM_031608 Theobroma cacao TCM_031608 I 0.687
Bo3g066710 Brassica oleracea Bo3g066710 I 0.687
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.687
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.686
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.686
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.686
estExt_Genemark1.C_100079 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_100079 I 0.685
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.685
Ca_22534 Cicer arietinum Ca_22534 I 0.685
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.685
estExt_fgeneshCV_pg.C_120242 Chlorella vulgaris estExt_fgeneshCV_pg.C_120242 I 0.685
SELMODRAFT_402810 Selaginella moellendorffii SELMODRAFT_402810 I 0.684
SELMODRAFT_439762 Selaginella moellendorffii SELMODRAFT_439762 I 0.684
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.684
Si036615m.g Setaria italica Si036615m.g I 0.683
Ca_20544 Cicer arietinum Ca_20544 I 0.683
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.681
Lus10017907.g Linum usitatissimum Lus10017907.g I 0.681
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.680
Bo4g024140 Brassica oleracea Bo4g024140 I 0.680
ERF13 Arabidopsis thaliana AT2G44840 D 0.680
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.680
Bo4g195220 Brassica oleracea Bo4g195220 I 0.680
Bra037630 Brassica rapa Bra037630 I 0.680
Bra004873 Brassica rapa Bra004873 I 0.680
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.680
GRMZM2G132223 Zea mays GRMZM2G132223 I 0.680
ATERF-7 Arabidopsis lyrata fgenesh2_kg.3__2255__AT3G20310.1 I 0.680
e_gw1.5.258.1 Physcomitrella patens e_gw1.5.258.1 I 0.680
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.680
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.680
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.680
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.680
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.679
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.679
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.679
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.679
Bo5g109800 Brassica oleracea Bo5g109800 I 0.679
Bra035792 Brassica rapa Bra035792 I 0.679
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.678
ERF4 Arabidopsis thaliana AT3G15210 D 0.678
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.678
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.678
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.678
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.678
Traes_4AS_094442636 Triticum aestivum Traes_4AS_094442636 I 0.677
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.677
Bra023748 Brassica rapa Bra023748 I 0.677
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.677
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.677
Bo1g102220 Brassica oleracea Bo1g102220 I 0.677