POPTR_0002s04010 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0002s04010 T004591_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.708 0.776
P93392_TOBAC
M09731_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OPBP1_01 		0.698 0.755
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.688 0.755
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.688 0.755
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.680 0.755
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.680 0.755
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.680 0.755
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.680 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s04010.1 AP2 107 159

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0006s0840 Salix purpurea SapurV1A.0006s0840 I 0.807
SapurV1A.3984s0010 Salix purpurea SapurV1A.3984s0010 I 0.807
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.764
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.764
MDP0000322279 Malus domestica MDP0000322279 I 0.738
TCM_026233 Theobroma cacao TCM_026233 I 0.735
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.735
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.732
TCM_026234 Theobroma cacao TCM_026234 I 0.730
TCM_004056 Theobroma cacao TCM_004056 I 0.729
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.729
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.728
Ca_07754 Cicer arietinum Ca_07754 I 0.727
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.727
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.726
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.726
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.726
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.726
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.725
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.725
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.722
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I 0.722
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.721
POPTR_0005s24470 Populus trichocarpa POPTR_0005s24470 I 0.719
mgf018693m Mimulus guttatus mgf018693m I 0.719
29680.m001678 Ricinus communis 29680.m001678 I 0.719
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.718
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.718
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.717
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.717
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.717
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.716
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.716
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.715
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.715
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.715
29584.m000234 Ricinus communis 29584.m000234 I 0.715
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.715
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.714
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I 0.714
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.713
MDP0000246808 Malus domestica MDP0000246808 I 0.711
MDP0000447570 Malus domestica MDP0000447570 I 0.711
Ca_12081 Cicer arietinum Ca_12081 I 0.710
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.710
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.709
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.709
Bra028703 Brassica rapa Bra028703 I 0.709
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.709
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.708
ERF094 Arabidopsis thaliana AT1G06160 D 0.708
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.706
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.706
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.706
OBART07G11330 Oryza barthii OBART07G11330 I 0.706
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.706
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.706
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.706
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.705
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.705
GSMUA_Achr2G17810_001 Musa acuminata GSMUA_Achr2G17810_001 I 0.705
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.705
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.705
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.703
OPUNC03G38860 Oryza punctata OPUNC03G38860 I 0.703
SapurV1A.3099s0010 Salix purpurea SapurV1A.3099s0010 I 0.702
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I 0.702
mgf022372m Mimulus guttatus mgf022372m I 0.702
Si032815m.g Setaria italica Si032815m.g I 0.702
GLYMA02G00870 Glycine max GLYMA02G00870 I 0.701
MTR_6g033255 Medicago truncatula MTR_6g033255 I 0.701
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.701
MLOC_80197 Hordeum vulgare MLOC_80197 I 0.700
Si038911m.g Setaria italica Si038911m.g I 0.700
Pavir.J16149 Panicum virgatum Pavir.J16149 I 0.700
F775_25471 Aegilops tauschii F775_25471 I 0.700
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.700
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.699
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.699
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.699
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.699
P93392_TOBAC Nicotiana tabacum P93392_TOBAC D 0.698
Sb01g000352 Sorghum bicolor Sb01g000352 I 0.698
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I 0.698
mgf023600m Mimulus guttatus mgf023600m I 0.697
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.697
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.697
Gorai.007G280900 Gossypium raimondii Gorai.007G280900 I 0.697
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.697
Ca_12221 Cicer arietinum Ca_12221 I 0.697
Gorai.007G280800 Gossypium raimondii Gorai.007G280800 I 0.697
GRMZM2G381441 Zea mays GRMZM2G381441 I 0.697
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.696
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.696
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.696
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I 0.695
Ca_12219 Cicer arietinum Ca_12219 I 0.694
Pm020604 Prunus mume Pm020604 I 0.694
chr1.CM0295.160.nd Lotus japonicus chr1.CM0295.160.nd I 0.694
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.694
Pm009382 Prunus mume Pm009382 I 0.694
Cla006080 Citrullus lanatus Cla006080 I 0.694
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.694
Ca_23170 Cicer arietinum Ca_23170 I 0.694
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.694
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.694
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.694
MDP0000167207 Malus domestica MDP0000167207 I 0.694
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.694
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.694
MTR_7g096780 Medicago truncatula MTR_7g096780 I 0.694
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.694
MDP0000235313 Malus domestica MDP0000235313 I 0.694
MDP0000127134 Malus domestica MDP0000127134 I 0.694
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.694
TCM_004052 Theobroma cacao TCM_004052 I 0.693
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.693
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I 0.693
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.693
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.693
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.693
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.693
Bra009272 Brassica rapa Bra009272 I 0.692
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I 0.692
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I 0.692
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I 0.692
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I 0.692
Carubv10002723m.g Capsella rubella Carubv10002723m.g I 0.692
Bo9g175390 Brassica oleracea Bo9g175390 I 0.692
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.692
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I 0.692
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.691
Cla007697 Citrullus lanatus Cla007697 I 0.691
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.691
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.691
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.691
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.691
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.691
MDP0000855671 Malus domestica MDP0000855671 I 0.691
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.691
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.691
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.690
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.690
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I 0.690
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.690
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I 0.690
cassava19959.m1 Manihot esculenta cassava19959.m1 I 0.690
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I 0.690
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.690
GLYMA06G17180 Glycine max GLYMA06G17180 I 0.690
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.690
TCM_014762 Theobroma cacao TCM_014762 I 0.690
Pavir.J02402 Panicum virgatum Pavir.J02402 I 0.690
Bra005932 Brassica rapa Bra005932 I 0.690
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I 0.690
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.689
29895.m000321 Ricinus communis 29895.m000321 I 0.689
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.689
Bo2g008570 Brassica oleracea Bo2g008570 I 0.689
gene06406-v1.0-hybrid Fragaria vesca gene06406-v1.0-hybrid I 0.689
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.688
ERF115 Arabidopsis thaliana AT5G07310 D 0.688
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.688
Bo3g004290 Brassica oleracea Bo3g004290 I 0.688
Ca_18387 Cicer arietinum Ca_18387 I 0.687
TCM_020871 Theobroma cacao TCM_020871 I 0.687
Cla021850 Citrullus lanatus Cla021850 I 0.687
Ca_04370 Cicer arietinum Ca_04370 I 0.687
Lus10022426.g Linum usitatissimum Lus10022426.g I 0.686
Ca_01387 Cicer arietinum Ca_01387 I 0.686
Cla007885 Citrullus lanatus Cla007885 I 0.686
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.686
MTR_3g098580 Medicago truncatula MTR_3g098580 I 0.686
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.686
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.686
ORGLA01G0324200 Oryza glaberrima ORGLA01G0324200 I 0.685
ORGLA05G0154400 Oryza glaberrima ORGLA05G0154400 I 0.685
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I 0.685
GRMZM2G100727 Zea mays GRMZM2G100727 I 0.685
BRADI2G24170 Brachypodium distachyon BRADI2G24170 I 0.685
ORUFI05G19030 Oryza rufipogon ORUFI05G19030 I 0.685
Si002010m.g Setaria italica Si002010m.g I 0.685
ONIVA05G18720 Oryza nivara ONIVA05G18720 I 0.685
BGIOSGA019928 Oryza indica BGIOSGA019928 I 0.685
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.685
Lus10006579.g Linum usitatissimum Lus10006579.g I 0.685
GRMZM2G149756 Zea mays GRMZM2G149756 I 0.685
OS05G0437100 Oryza sativa OS05G0437100 I 0.685
POPTR_0005s21690 Populus trichocarpa POPTR_0005s21690 I 0.685
OS01G0868000 Oryza sativa OS01G0868000 I 0.685
LPERR01G33110 Leersia perrieri LPERR01G33110 I 0.685
ORUFI01G41960 Oryza rufipogon ORUFI01G41960 I 0.685
Pavir.Ea03713 Panicum virgatum Pavir.Ea03713 I 0.685
BGIOSGA000428 Oryza indica BGIOSGA000428 I 0.685
MDP0000894895 Malus domestica MDP0000894895 I 0.685
OMERI01G35460 Oryza meridionalis OMERI01G35460 I 0.685
MLOC_7891 Hordeum vulgare MLOC_7891 I 0.685
29900.m001561 Ricinus communis 29900.m001561 I 0.685
F775_22331 Aegilops tauschii F775_22331 I 0.685
OGLUM01G42800 Oryza glumaepatula OGLUM01G42800 I 0.685
mgf023779m Mimulus guttatus mgf023779m I 0.685
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.685
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.685
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.685
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.685
Pavir.J03755 Panicum virgatum Pavir.J03755 I 0.685
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.685
ONIVA01G43260 Oryza nivara ONIVA01G43260 I 0.685
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I 0.684
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.684
Cucsa.250290 Cucumis sativus Cucsa.250290 I 0.684
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.684
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.684
Si033089m.g Setaria italica Si033089m.g I 0.684
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.684
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I 0.683
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.683
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.683
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.683
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.683
Pm024604 Prunus mume Pm024604 I 0.683
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.682
Carubv10010478m.g Capsella rubella Carubv10010478m.g I 0.682
Cagra.3842s0001 Capsella grandiflora Cagra.3842s0001 I 0.682
cassava19042.valid.m1 Manihot esculenta cassava19042.valid.m1 I 0.682
cassava19043.valid.m1 Manihot esculenta cassava19043.valid.m1 I 0.682
MTR_1g098460 Medicago truncatula MTR_1g098460 I 0.682
gene27604-v1.0-hybrid Fragaria vesca gene27604-v1.0-hybrid I 0.682
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.682
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.682
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.682
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.682
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.681
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.681
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.681
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I 0.680
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.680
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.680
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I 0.680
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I 0.680
30147.m014403 Ricinus communis 30147.m014403 I 0.680
Ca_19135 Cicer arietinum Ca_19135 I 0.680
RAP2-6 Arabidopsis thaliana AT1G43160 D 0.680
POPTR_0007s07090 Populus trichocarpa POPTR_0007s07090 I 0.680
MDP0000668122 Malus domestica MDP0000668122 I 0.680
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I 0.680
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.680
Thhalv10014579m.g Eutrema salsugineum Thhalv10014579m.g I 0.680
F775_22020 Aegilops tauschii F775_22020 I 0.680
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.679
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.679
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.679
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.679
Lus10014655.g Linum usitatissimum Lus10014655.g I 0.679
OS07G0410700 Oryza sativa OS07G0410700 I 0.679
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.679
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.679
OBART07G11340 Oryza barthii OBART07G11340 I 0.679
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.678
Gorai.009G255400 Gossypium raimondii Gorai.009G255400 I 0.678
Si026709m.g Setaria italica Si026709m.g I 0.678
Pavir.Hb01784 Panicum virgatum Pavir.Hb01784 I 0.678
Pavir.Ha01720 Panicum virgatum Pavir.Ha01720 I 0.678
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I 0.677
Eucgr.I00292 Eucalyptus grandis Eucgr.I00292 I 0.677
TCM_001301 Theobroma cacao TCM_001301 I 0.677
ERF110 Arabidopsis lyrata fgenesh2_kg.8__881__AT5G50080.1 I 0.677
GLYMA06G15341 Glycine max GLYMA06G15341 I 0.677
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.677
ERF110 Arabidopsis thaliana AT5G50080 I 0.677