POPTR_0003s07700 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0003s07700 T004614_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.740 0.843
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.740 0.843
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.740 0.843
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.740 0.843
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.740 0.843
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.740 0.843
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.740 0.824
Q3HS42_BRANA
M09739_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII4_01 		0.698 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s07700.1 AP2 38 89

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0001s15550 Populus trichocarpa POPTR_0001s15550 I 0.783
SapurV1A.1528s0030 Salix purpurea SapurV1A.1528s0030 I 0.775
SapurV1A.1087s0080 Salix purpurea SapurV1A.1087s0080 I 0.774
SapurV1A.1360s0120 Salix purpurea SapurV1A.1360s0120 I 0.754
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.750
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.750
Cla005715 Citrullus lanatus Cla005715 I 0.744
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.744
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.741
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.741
Bo7g104770 Brassica oleracea Bo7g104770 I 0.741
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.740
Bo4g036220 Brassica oleracea Bo4g036220 I 0.740
ERF038 Arabidopsis thaliana AT2G35700 D 0.740
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.740
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.740
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.740
ERF039 Arabidopsis thaliana AT4G16750 D 0.740
Bra040092 Brassica rapa Bra040092 I 0.740
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.740
Bra012693 Brassica rapa Bra012693 I 0.740
Bra005314 Brassica rapa Bra005314 I 0.740
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.740
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.740
Bo1g053270 Brassica oleracea Bo1g053270 I 0.740
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.740
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.740
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.740
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.739
TCM_015930 Theobroma cacao TCM_015930 I 0.738
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.737
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.737
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.732
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.732
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.732
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.732
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.732
Bo3g028500 Brassica oleracea Bo3g028500 I 0.731
PK25970.1 Cannabis sativa PK25970.1 I 0.731
Bra023026 Brassica rapa Bra023026 I 0.731
Pm023417 Prunus mume Pm023417 I 0.729
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.729
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.725
Ca_12765 Cicer arietinum Ca_12765 I 0.719
28353.m000054 Ricinus communis 28353.m000054 I 0.717
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.713
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.699
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.698
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.693
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.693
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.692
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.688
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.687
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.687
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.687
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.687
Bo4g184540 Brassica oleracea Bo4g184540 I 0.685
Gorai.008G107700 Gossypium raimondii Gorai.008G107700 I 0.679
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.678
Cla017050 Citrullus lanatus Cla017050 I 0.678
Ca_28185 Cicer arietinum Ca_28185 I 0.677
Ca_01908 Cicer arietinum Ca_01908 I 0.677
Pm013463 Prunus mume Pm013463 I 0.677
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.677
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.677
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.677