POPTR_0005s24110 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0005s24110 T004643_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR

YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.782 0.851
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR

YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.741 0.830
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.741 0.830
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR

YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.741 0.830
OS05G0497200
M01636_2.00
Oryza sativa
CGSCGCCR

YGGCGSCG
PBM
Weirauch et al.(2014)
pTH8640
0.738 0.766
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.720 0.745
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.715 0.723
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.715 0.723
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.710 0.745
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.710 0.745
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.703 0.723
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.685 0.702
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.685 0.702
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.685 0.702
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s24110.1 AP2 28 79

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

432 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HMO1 Saccharomyces cerevisiae YDR174W D 0.000
AGOS_AGL141W Ashbya gossypii AGOS_AGL141W I 0.000
TBLA_0A01170 Tetrapisispora blattae TBLA_0A01170 I 0.000
TBLA_0H01020 Tetrapisispora blattae TBLA_0H01020 I 0.000
TPHA_0C02460 Tetrapisispora phaffii TPHA_0C02460 I 0.000
ZBAI_01315 Zygosaccharomyces bailii ZBAI_01315 I 0.000
ZBAI_09581 Zygosaccharomyces bailii ZBAI_09581 I 0.000
ZYRO0C03718g Zygosaccharomyces rouxii ZYRO0C03718g I 0.000
Scas_Contig682.13 Saccharomyces castellii Scas_Contig682.13 I 0.000
3875_YDR174W Saccharomyces mikatae 3875_YDR174W I 0.000
4397_YDR174W Saccharomyces paradoxus 4397_YDR174W I 0.000
KLTH0F09020g Kluyveromyces thermotolerans KLTH0F09020g I 0.000
SAKL0H14234g Lachancea kluyveri SAKL0H14234g I 0.000
SU7_2586 Saccharomyces arboricola SU7_2586 I 0.000
SKUD_149803 Saccharomyces kudriavzevii SKUD_149803 I 0.000
KAFR_0B06030 Kazachstania africana KAFR_0B06030 I 0.000
CAGL0E00737g Candida glabrata CAGL0E00737g I 0.000
BN7_2978 Wickerhamomyces ciferrii BN7_2978 I 0.000
KLTH0F09020g Lachancea thermotolerans KLTH0F09020g I 0.000
KNAG_0A04840 Kazachstania naganishii KNAG_0A04840 I 0.000
Kpol_1024p24 Vanderwaltozyma polyspora Kpol_1024p24 I 0.000
LALA0_S03e03444g Lachancea lanzarotensis LALA0_S03e03444g I 0.000
NCAS_0B03190 Naumovozyma castellii NCAS_0B03190 I 0.000
NDAI_0A01190 Naumovozyma dairenensis NDAI_0A01190 I 0.000
Ecym_4194 Eremothecium cymbalariae Ecym_4194 I 0.000
GNLVRS01_PISO0I16552g Millerozyma farinosa GNLVRS01_PISO0I16552g N 0.000
GNLVRS01_PISO0J18313g Millerozyma farinosa GNLVRS01_PISO0J18313g N 0.000
PAS_chr2-2_0488 Komagataella pastoris PAS_chr2-2_0488 N 0.000
XP_002491904.1 Pichia pastoris XP_002491904.1 N 0.000