CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0005s24470
(
Populus trichocarpa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
POPTR_0005s24470
T004646_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD
HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.712
0.816
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.701
0.857
ERF15
M00718_2.00
Arabidopsis thaliana
NGSCGSCB
VGSCGSCN
PBM
Chang et al.(2013)
pTH7336
0.682
0.796
ERF15
M06604_2.00
Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF15_colamp_a
0.682
0.796
ERF15
M06605_2.00
Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN
Dap-seq
OMalley et al.(2016)
ERF15_col
0.682
0.796
P93392_TOBAC
M09731_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OPBP1_01
0.681
0.776
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0005s24470.1
AP2
105
157
KTYRGVRKRPWGKYAAEIRDSTRNGVRVWLGTFDTGETAALAYDQAALSLHGS
Links
Other
AP2
family TFs
Other
Populus trichocarpa
TFs
214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0233s0360
Salix purpurea
SapurV1A.0233s0360
I
0.768
SapurV1A.4312s0010
Salix purpurea
SapurV1A.4312s0010
I
0.768
Traes_4AL_F18648C49
Triticum aestivum
Traes_4AL_F18648C49
I
0.761
Gorai.007G280900
Gossypium raimondii
Gorai.007G280900
I
0.746
Gorai.007G280800
Gossypium raimondii
Gorai.007G280800
I
0.746
TCM_026234
Theobroma cacao
TCM_026234
I
0.735
TCM_004056
Theobroma cacao
TCM_004056
I
0.734
Lus10006579.g
Linum usitatissimum
Lus10006579.g
I
0.734
SapurV1A.3984s0010
Salix purpurea
SapurV1A.3984s0010
I
0.732
SapurV1A.0006s0840
Salix purpurea
SapurV1A.0006s0840
I
0.732
Lus10022015.g
Linum usitatissimum
Lus10022015.g
I
0.730
Lus10042557.g
Linum usitatissimum
Lus10042557.g
I
0.730
Gorai.013G186700
Gossypium raimondii
Gorai.013G186700
I
0.727
VIT_14s0081g00730
Vitis vinifera
VIT_14s0081g00730
I
0.726
29680.m001678
Ricinus communis
29680.m001678
I
0.724
MDP0000322279
Malus domestica
MDP0000322279
I
0.721
GLYMA19G34696
Glycine max
GLYMA19G34696
I
0.719
cassava37347.valid.m1
Manihot esculenta
cassava37347.valid.m1
I
0.719
POPTR_0002s04010
Populus trichocarpa
POPTR_0002s04010
I
0.719
Gorai.007G145800
Gossypium raimondii
Gorai.007G145800
I
0.719
29584.m000234
Ricinus communis
29584.m000234
I
0.719
TCM_026233
Theobroma cacao
TCM_026233
I
0.718
cassava38166.valid.m1
Manihot esculenta
cassava38166.valid.m1
I
0.718
Gorai.007G281000
Gossypium raimondii
Gorai.007G281000
I
0.718
Lus10014655.g
Linum usitatissimum
Lus10014655.g
I
0.718
GLYMA03G31940
Glycine max
GLYMA03G31940
I
0.717
cassava22677.valid.m1
Manihot esculenta
cassava22677.valid.m1
I
0.715
Lus10022935.g
Linum usitatissimum
Lus10022935.g
I
0.713
GSMUA_AchrUn_randomG10760_001
Musa acuminata
GSMUA_AchrUn_randomG10760_001
I
0.713
cassava47179.m1
Manihot esculenta
cassava47179.m1
I
0.712
ERF094
Arabidopsis thaliana
AT1G06160
D
0.712
evm.TU.supercontig_162.25
Carica papaya
evm.TU.supercontig_162.25
I
0.711
VIT_07s0005g03230
Vitis vinifera
VIT_07s0005g03230
I
0.710
MTR_1g069945
Medicago truncatula
MTR_1g069945
I
0.710
LPERR03G35710
Leersia perrieri
LPERR03G35710
I
0.710
Gorai.013G186800
Gossypium raimondii
Gorai.013G186800
I
0.710
VIT_07s0005g03260
Vitis vinifera
VIT_07s0005g03260
I
0.710
Ca_07754
Cicer arietinum
Ca_07754
I
0.710
GLYMA10G04210
Glycine max
GLYMA10G04210
I
0.709
GLYMA13G18410
Glycine max
GLYMA13G18410
I
0.709
GLYMA19G43815
Glycine max
GLYMA19G43815
I
0.709
LjSGA_017232.1
Lotus japonicus
LjSGA_017232.1
I
0.709
OPUNC03G38860
Oryza punctata
OPUNC03G38860
I
0.708
Gorai.001G253100
Gossypium raimondii
Gorai.001G253100
I
0.707
GLYMA13G18370
Glycine max
GLYMA13G18370
I
0.706
POPTR_0013s04240
Populus trichocarpa
POPTR_0013s04240
I
0.705
Si038911m.g
Setaria italica
Si038911m.g
I
0.705
Pavir.J16149
Panicum virgatum
Pavir.J16149
I
0.705
Traes_2BL_0B09B840B
Triticum aestivum
Traes_2BL_0B09B840B
I
0.705
F775_25471
Aegilops tauschii
F775_25471
I
0.705
MLOC_80197
Hordeum vulgare
MLOC_80197
I
0.705
SapurV1A.0132s0310
Salix purpurea
SapurV1A.0132s0310
I
0.704
PGSC0003DMG400013255
Solanum tuberosum
PGSC0003DMG400013255
I
0.704
Solyc11g011740.1
Solanum lycopersicum
Solyc11g011740.1
I
0.704
Thhalv10008518m.g
Eutrema salsugineum
Thhalv10008518m.g
I
0.703
Sb01g000352
Sorghum bicolor
Sb01g000352
I
0.703
Gorai.004G057000
Gossypium raimondii
Gorai.004G057000
I
0.703
Cagra.1671s0247
Capsella grandiflora
Cagra.1671s0247
I
0.702
Bostr.25219s0341
Boechera stricta
Bostr.25219s0341
I
0.702
Carubv10010105m.g
Capsella rubella
Carubv10010105m.g
I
0.702
BRADI1G00670
Brachypodium distachyon
BRADI1G00670
I
0.702
mgf018693m
Mimulus guttatus
mgf018693m
I
0.702
Ciclev10024142m.g
Citrus clementina
Ciclev10024142m.g
I
0.701
orange1.1g047387m.g
Citrus sinensis
orange1.1g047387m.g
I
0.701
Q5Y836_TOBAC
Nicotiana tabacum
Q5Y836_TOBAC
D
0.701
GLYMA10G04170
Glycine max
GLYMA10G04170
I
0.701
GRMZM2G381441
Zea mays
GRMZM2G381441
I
0.701
Bra015478
Brassica rapa
Bra015478
I
0.701
SapurV1A.0006s0850
Salix purpurea
SapurV1A.0006s0850
I
0.700
POPTR_0002s04020
Populus trichocarpa
POPTR_0002s04020
I
0.700
Cucsa.062330
Cucumis sativus
Cucsa.062330
I
0.700
GSMUA_Achr11G22020_001
Musa acuminata
GSMUA_Achr11G22020_001
I
0.699
GSMUA_Achr5G19610_001
Musa acuminata
GSMUA_Achr5G19610_001
I
0.699
Ciclev10021622m.g
Citrus clementina
Ciclev10021622m.g
I
0.699
Gorai.001G176800
Gossypium raimondii
Gorai.001G176800
I
0.699
orange1.1g042174m.g
Citrus sinensis
orange1.1g042174m.g
I
0.699
TCM_004052
Theobroma cacao
TCM_004052
I
0.698
POPTR_0005s24460
Populus trichocarpa
POPTR_0005s24460
I
0.698
SapurV1A.0233s0370
Salix purpurea
SapurV1A.0233s0370
I
0.698
BGIOSGA009392
Oryza indica
BGIOSGA009392
I
0.697
Eucgr.K03266
Eucalyptus grandis
Eucgr.K03266
I
0.697
Bo8g114710
Brassica oleracea
Bo8g114710
I
0.697
OMERI03G15490
Oryza meridionalis
OMERI03G15490
I
0.697
ONIVA01G48030
Oryza nivara
ONIVA01G48030
I
0.697
OLONG_002067
Oryza longistaminata
OLONG_002067
I
0.697
OGLUM03G41640
Oryza glumaepatula
OGLUM03G41640
I
0.697
OBART03G41810
Oryza barthii
OBART03G41810
I
0.697
OS03G0860100
Oryza sativa
OS03G0860100
I
0.697
Bo5g007280
Brassica oleracea
Bo5g007280
I
0.697
Eucgr.H03088
Eucalyptus grandis
Eucgr.H03088
I
0.697
ORUFI03G43580
Oryza rufipogon
ORUFI03G43580
I
0.697
ORGLA03G0387300
Oryza glaberrima
ORGLA03G0387300
I
0.697
GSMUA_Achr4G12060_001
Musa acuminata
GSMUA_Achr4G12060_001
I
0.696
Pavir.Ia00066
Panicum virgatum
Pavir.Ia00066
I
0.696
Solyc09g066360.1
Solanum lycopersicum
Solyc09g066360.1
I
0.696
Gorai.004G220800
Gossypium raimondii
Gorai.004G220800
I
0.695
Eucgr.H04254
Eucalyptus grandis
Eucgr.H04254
I
0.695
PGSC0003DMG400010285
Solanum tuberosum
PGSC0003DMG400010285
I
0.695
MDP0000447570
Malus domestica
MDP0000447570
I
0.694
MDP0000246808
Malus domestica
MDP0000246808
I
0.694
Traes_2AL_0B28B6DBE
Triticum aestivum
Traes_2AL_0B28B6DBE
I
0.694
Traes_5BL_FBC7AF288
Triticum aestivum
Traes_5BL_FBC7AF288
I
0.694
MTR_1g074370
Medicago truncatula
MTR_1g074370
I
0.693
Pm003579
Prunus mume
Pm003579
I
0.693
Ca_12081
Cicer arietinum
Ca_12081
I
0.693
PRUPE_ppa016384mg
Prunus persica
PRUPE_ppa016384mg
I
0.693
POPTR_0010s08300
Populus trichocarpa
POPTR_0010s08300
I
0.692
chr5.CM0341.90.nc
Lotus japonicus
chr5.CM0341.90.nc
I
0.691
Traes_4DL_CB92B5ABB
Triticum aestivum
Traes_4DL_CB92B5ABB
I
0.690
Pavir.Ba03491
Panicum virgatum
Pavir.Ba03491
I
0.690
F775_22331
Aegilops tauschii
F775_22331
I
0.690
Pavir.J28684
Panicum virgatum
Pavir.J28684
I
0.690
Sb02g005810
Sorghum bicolor
Sb02g005810
I
0.689
Sb02g005840
Sorghum bicolor
Sb02g005840
I
0.689
Si033089m.g
Setaria italica
Si033089m.g
I
0.689
GSMUA_Achr4G05520_001
Musa acuminata
GSMUA_Achr4G05520_001
I
0.689
MTR_1g069940
Medicago truncatula
MTR_1g069940
I
0.689
Gorai.005G049300
Gossypium raimondii
Gorai.005G049300
I
0.688
ONIVA01G50300
Oryza nivara
ONIVA01G50300
I
0.687
LPERR03G03540
Leersia perrieri
LPERR03G03540
I
0.687
BGIOSGA011868
Oryza indica
BGIOSGA011868
I
0.687
gene16619-v1.0-hybrid
Fragaria vesca
gene16619-v1.0-hybrid
I
0.687
BGIOSGA024429
Oryza indica
BGIOSGA024429
I
0.687
ONIVA03G03670
Oryza nivara
ONIVA03G03670
I
0.687
OBART07G11330
Oryza barthii
OBART07G11330
I
0.687
OBART03G03890
Oryza barthii
OBART03G03890
I
0.687
OGLUM03G03790
Oryza glumaepatula
OGLUM03G03790
I
0.687
OLONG_008277
Oryza longistaminata
OLONG_008277
I
0.687
ORGLA07G0097000
Oryza glaberrima
ORGLA07G0097000
I
0.687
ORUFI03G03630
Oryza rufipogon
ORUFI03G03630
I
0.687
OS03G0150200
Oryza sativa
OS03G0150200
I
0.687
Gorai.001G252600
Gossypium raimondii
Gorai.001G252600
I
0.687
ORGLA03G0036700
Oryza glaberrima
ORGLA03G0036700
I
0.687
ORUFI07G11580
Oryza rufipogon
ORUFI07G11580
I
0.687
AMTR_s00021p00184450
Amborella trichopoda
AMTR_s00021p00184450
I
0.686
OGLUM07G10870
Oryza glumaepatula
OGLUM07G10870
I
0.686
ORA59
Arabidopsis lyrata
fgenesh2_kg.1__587__AT1G06160.1
I
0.686
PGSC0003DMG400017231
Solanum tuberosum
PGSC0003DMG400017231
I
0.685
OPUNC03G03600
Oryza punctata
OPUNC03G03600
I
0.685
Solyc09g089930.1
Solanum lycopersicum
Solyc09g089930.1
I
0.685
F775_22020
Aegilops tauschii
F775_22020
I
0.685
Traes_4AL_5E86DF14B
Triticum aestivum
Traes_4AL_5E86DF14B
I
0.685
Traes_4AL_1A0E673DC
Triticum aestivum
Traes_4AL_1A0E673DC
I
0.685
Si032815m.g
Setaria italica
Si032815m.g
I
0.685
Bo4g176080
Brassica oleracea
Bo4g176080
I
0.683
Bra021712
Brassica rapa
Bra021712
I
0.683
Cagra.6952s0002
Capsella grandiflora
Cagra.6952s0002
I
0.682
Bostr.24513s0101
Boechera stricta
Bostr.24513s0101
I
0.682
Carubv10025229m.g
Capsella rubella
Carubv10025229m.g
I
0.682
ERF15
Arabidopsis thaliana
AT2G31230
D
0.682
POPTR_0019s03170
Populus trichocarpa
POPTR_0019s03170
I
0.682
Bo4g052480
Brassica oleracea
Bo4g052480
I
0.682
PK23186.1
Cannabis sativa
PK23186.1
I
0.682
POPTR_0102s00200
Populus trichocarpa
POPTR_0102s00200
I
0.682
Bra018271
Brassica rapa
Bra018271
I
0.682
ATERF15
Arabidopsis lyrata
fgenesh2_kg.4__1110__AT2G31230.1
I
0.682
Cucsa.201950
Cucumis sativus
Cucsa.201950
I
0.681
P93392_TOBAC
Nicotiana tabacum
P93392_TOBAC
D
0.681
Traes_4BL_39AE2989D
Triticum aestivum
Traes_4BL_39AE2989D
I
0.681
BRADI1G75040
Brachypodium distachyon
BRADI1G75040
I
0.681
MLOC_77420
Hordeum vulgare
MLOC_77420
I
0.681
F775_52314
Aegilops tauschii
F775_52314
I
0.681
Traes_5DL_53D8DF9CD
Triticum aestivum
Traes_5DL_53D8DF9CD
I
0.681
Traes_5BL_4E044468C
Triticum aestivum
Traes_5BL_4E044468C
I
0.681
SapurV1A.2490s0030
Salix purpurea
SapurV1A.2490s0030
I
0.680
Thhalv10017149m.g
Eutrema salsugineum
Thhalv10017149m.g
I
0.680
SapurV1A.0007s0980
Salix purpurea
SapurV1A.0007s0980
I
0.680
Solyc03g005520.1
Solanum lycopersicum
Solyc03g005520.1
I
0.680
ONIVA10G08250
Oryza nivara
ONIVA10G08250
I
0.680
ORGLA10G0072500
Oryza glaberrima
ORGLA10G0072500
I
0.680
ORUFI10G09060
Oryza rufipogon
ORUFI10G09060
I
0.680
OS10G0390800
Oryza sativa
OS10G0390800
I
0.680
OMERI10G05820
Oryza meridionalis
OMERI10G05820
I
0.680
OGLUM10G08400
Oryza glumaepatula
OGLUM10G08400
I
0.680
BGIOSGA032849
Oryza indica
BGIOSGA032849
I
0.680
Bo3g025110
Brassica oleracea
Bo3g025110
I
0.680
Bra022832
Brassica rapa
Bra022832
I
0.680
PGSC0003DMG400014204
Solanum tuberosum
PGSC0003DMG400014204
I
0.680
PGSC0003DMG400013402
Solanum tuberosum
PGSC0003DMG400013402
I
0.680
mgf023600m
Mimulus guttatus
mgf023600m
I
0.680
Ca_12221
Cicer arietinum
Ca_12221
I
0.680
OMERI05G16180
Oryza meridionalis
OMERI05G16180
I
0.679
ONIVA05G19500
Oryza nivara
ONIVA05G19500
I
0.679
OPUNC05G16280
Oryza punctata
OPUNC05G16280
I
0.679
OGLUM05G19620
Oryza glumaepatula
OGLUM05G19620
I
0.679
ORGLA05G0161000
Oryza glaberrima
ORGLA05G0161000
I
0.679
OBART05G18540
Oryza barthii
OBART05G18540
I
0.679
Aquca_017_00711
Aquilegia coerulea
Aquca_017_00711
I
0.679
GLYMA13G18350
Glycine max
GLYMA13G18350
I
0.679
PGSC0003DMG400045092
Solanum tuberosum
PGSC0003DMG400045092
I
0.679
ORUFI05G19730
Oryza rufipogon
ORUFI05G19730
I
0.679
GLYMA13G18390
Glycine max
GLYMA13G18390
I
0.679
SapurV1A.0816s0060
Salix purpurea
SapurV1A.0816s0060
I
0.678
mgf022372m
Mimulus guttatus
mgf022372m
I
0.678
Pavir.Ib03119
Panicum virgatum
Pavir.Ib03119
I
0.678
GSMUA_Achr6G32030_001
Musa acuminata
GSMUA_Achr6G32030_001
I
0.677
MTR_1g043350
Medicago truncatula
MTR_1g043350
I
0.677
MDP0000167207
Malus domestica
MDP0000167207
I
0.677
MDP0000127134
Malus domestica
MDP0000127134
I
0.677
Lus10033885.g
Linum usitatissimum
Lus10033885.g
I
0.677
Solyc04g014530.1
Solanum lycopersicum
Solyc04g014530.1
I
0.677
PRUPE_ppa024173mg
Prunus persica
PRUPE_ppa024173mg
I
0.677
PRUPE_ppa023839mg
Prunus persica
PRUPE_ppa023839mg
I
0.677
MDP0000235313
Malus domestica
MDP0000235313
I
0.677
PGSC0003DMG400023619
Solanum tuberosum
PGSC0003DMG400023619
I
0.677
orange1.1g039409m.g
Citrus sinensis
orange1.1g039409m.g
I
0.677
Ca_23170
Cicer arietinum
Ca_23170
I
0.677
Solyc11g006050.1
Solanum lycopersicum
Solyc11g006050.1
I
0.677
Pm009382
Prunus mume
Pm009382
I
0.677
Ciclev10005820m.g
Citrus clementina
Ciclev10005820m.g
I
0.677
Cucsa.053560
Cucumis sativus
Cucsa.053560
I
0.677
Lus10003562.g
Linum usitatissimum
Lus10003562.g
I
0.677
Pm020604
Prunus mume
Pm020604
I
0.677
Cla006080
Citrullus lanatus
Cla006080
I
0.677