POPTR_0006s25500 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0006s25500 T004662_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN

NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.700 0.900
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN

NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.700 0.900
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.694 0.880
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.694 0.880
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.694 0.880
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.679 0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.679 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s25500.1 AP2 59 110
POPTR_0006s25500.2 AP2 1 45

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF034 Arabidopsis thaliana AT2G44940 D 0.679
ERF043 Arabidopsis thaliana AT4G32800 D 0.694
TINY Arabidopsis thaliana AT5G25810 D 0.700
Ca_28185 Cicer arietinum Ca_28185 I 0.740
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.679
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.760
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.681
mgf024703m Mimulus guttatus mgf024703m I 0.748
mgf022971m Mimulus guttatus mgf022971m I 0.698
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.697
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.694
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.679
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.682
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.694
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.700
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.760
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.694
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.698
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.749
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.680
Cla021417 Citrullus lanatus Cla021417 I 0.702
Cla022553 Citrullus lanatus Cla022553 I 0.752
Pm005151 Prunus mume Pm005151 I 0.766
Pm013463 Prunus mume Pm013463 I 0.680
Pm017610 Prunus mume Pm017610 I 0.677
Pm023417 Prunus mume Pm023417 I 0.681
28353.m000054 Ricinus communis 28353.m000054 I 0.682
29794.m003381 Ricinus communis 29794.m003381 I 0.766
30146.m003535 Ricinus communis 30146.m003535 I 0.700
30174.m008790 Ricinus communis 30174.m008790 I 0.685
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.766
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.766
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.680
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.679
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.682
MDP0000241650 Malus domestica MDP0000241650 I 0.766
MDP0000242611 Malus domestica MDP0000242611 I 0.766
MDP0000790788 Malus domestica MDP0000790788 I 0.697
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.766
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.680
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.842
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.766
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.677
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.761
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.700
PK28082.1 Cannabis sativa PK28082.1 I 0.766
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.717
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.686
MDP0000174352 Malus domestica MDP0000174352 I 0.735
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.682
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.692
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.766
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.761
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.748
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.739
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.700
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.740
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.766
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.740
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.745
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.707
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.683
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.763
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.692
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.714
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.758
Bra037041 Brassica rapa Bra037041 I 0.701
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.679
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.760
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.739
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.749
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.752
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.739
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.766
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.700
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.756
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.732
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.716
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.697
Bra034535 Brassica rapa Bra034535 I 0.700
Bra034273 Brassica rapa Bra034273 I 0.677
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.752
ERF042 Arabidopsis thaliana AT2G25820 I 0.677
DREB3 Arabidopsis thaliana AT5G11590 I 0.760
Bo2g010530 Brassica oleracea Bo2g010530 I 0.753
Bo3g171090 Brassica oleracea Bo3g171090 I 0.700
Bo4g184540 Brassica oleracea Bo4g184540 I 0.703
Bo7g095710 Brassica oleracea Bo7g095710 I 0.700
Bo7g115860 Brassica oleracea Bo7g115860 I 0.700
Bo9g170060 Brassica oleracea Bo9g170060 I 0.758
Bra008952 Brassica rapa Bra008952 I 0.758
Bra009862 Brassica rapa Bra009862 I 0.700
Bra017302 Brassica rapa Bra017302 I 0.709
Bra023332 Brassica rapa Bra023332 I 0.748
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.725
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.753
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.696
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.748
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.687
TCM_005639 Theobroma cacao TCM_005639 I 0.679
TCM_014892 Theobroma cacao TCM_014892 I 0.677
TCM_028851 Theobroma cacao TCM_028851 I 0.701
TCM_037194 Theobroma cacao TCM_037194 I 0.766
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.741
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.741
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.766
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.685
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.739
Ca_01908 Cicer arietinum Ca_01908 I 0.740
Ca_14911 Cicer arietinum Ca_14911 I 0.759
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.689
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.678
Ca_18948 Cicer arietinum Ca_18948 I 0.698
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.761
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.748
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.683
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.706
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.678
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.687
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.679
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.766
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.677
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.681
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.694
GSMUA_Achr5G06570_001 Musa acuminata GSMUA_Achr5G06570_001 N 0.679
XM_002324763.1 Populus trichocarpa POPTR_0018s00270 N 0.687
Eucgr.C00590 Eucalyptus grandis Eucgr.C00590 N 0.682
BRADI5G17630 Brachypodium distachyon BRADI5G17630 N 0.744