POPTR_0006s25500 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0006s25500 T004662_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN

NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.700 0.900
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN

NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.700 0.900
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.694 0.880
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.694 0.880
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.694 0.880
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.679 0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.679 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s25500.1 AP2 59 110
POPTR_0006s25500.2 AP2 1 45

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACHR003395 Anopheles christyi ACHR003395 N 0.000
ADAC003009 Anopheles darlingi ADAC003009 N 0.000
ADIR005871 Anopheles dirus ADIR005871 N 0.000
AEPI010005 Anopheles epiroticus AEPI010005 N 0.000
AFAF005309 Anopheles farauti AFAF005309 N 0.000
AMIN000082 Anopheles minimus AMIN000082 N 0.000