POPTR_0013s05330 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0013s05330 T004712_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.735 0.941
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.735 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s05330.1 AP2 35 86

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.746
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.746
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.738
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.737
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.737
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.737
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.737
MDP0000177547 Malus domestica MDP0000177547 I 0.737
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.737
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.737
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.737
Ca_08232 Cicer arietinum Ca_08232 I 0.737
Pm025326 Prunus mume Pm025326 I 0.737
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.737
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.737
TCM_025913 Theobroma cacao TCM_025913 I 0.737
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.737
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.737
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.736
OBART07G06690 Oryza barthii OBART07G06690 I 0.736
OB07G15030 Oryza brachyantha OB07G15030 I 0.736
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.736
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.736
TCM_040015 Theobroma cacao TCM_040015 I 0.736
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.736
OS07G0204000 Oryza sativa OS07G0204000 I 0.736
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.736
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.736
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.736
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.736
Bra002262 Brassica rapa Bra002262 I 0.735
Bo9g152440 Brassica oleracea Bo9g152440 I 0.735
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.735
Bra020063 Brassica rapa Bra020063 I 0.735
Bo3g013830 Brassica oleracea Bo3g013830 I 0.735
Bra006518 Brassica rapa Bra006518 I 0.735
Bo2g018360 Brassica oleracea Bo2g018360 I 0.735
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.735
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.735
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.735
30084.m000185 Ricinus communis 30084.m000185 I 0.735
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.735
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.735
mgf022665m Mimulus guttatus mgf022665m I 0.735
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.734
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.734
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.733
Si033237m.g Setaria italica Si033237m.g I 0.732
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.732
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.732
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.731
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.730
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.729
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.728
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.727
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.726
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.724
Cla012318 Citrullus lanatus Cla012318 I 0.724
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.722
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.722
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.722
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.722
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.722
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.722
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.721
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.711
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.710
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.710
MDP0000172804 Malus domestica MDP0000172804 I 0.708
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.708
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.707
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.707
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.704
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.704
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.704
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.704
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.704
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.704
Cla010474 Citrullus lanatus Cla010474 I 0.704
Si024417m.g Setaria italica Si024417m.g I 0.704
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.704
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.704
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.704
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.704
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.704
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.700
MDP0000551969 Malus domestica MDP0000551969 I 0.700
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.700
MDP0000276536 Malus domestica MDP0000276536 I 0.700
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.700
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.700
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.700
Si038848m.g Setaria italica Si038848m.g I 0.700
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.700
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.700
OBART12G17080 Oryza barthii OBART12G17080 I 0.700
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.700
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.700
OS12G0582900 Oryza sativa OS12G0582900 I 0.700
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.700
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.700
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.700
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.700
F775_02727 Aegilops tauschii F775_02727 I 0.700
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.700
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.700
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.700
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.700
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.700
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.700
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.700
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.700
PK13330.1 Cannabis sativa PK13330.1 I 0.700
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.700
Ca_10494 Cicer arietinum Ca_10494 I 0.700
29635.m000461 Ricinus communis 29635.m000461 I 0.700
Pm015931 Prunus mume Pm015931 I 0.700
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.700
TCM_018659 Theobroma cacao TCM_018659 I 0.700
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.700
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.700
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.700
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.699
29813.m001543 Ricinus communis 29813.m001543 I 0.699
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.699
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.699
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.699
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.699
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.697
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.695
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.695
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.691
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.691
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.689
mgf023693m Mimulus guttatus mgf023693m I 0.689
mgf022810m Mimulus guttatus mgf022810m I 0.689
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.687
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.685
MDP0000525933 Malus domestica MDP0000525933 I 0.685
Pm000004 Prunus mume Pm000004 I 0.685
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.684
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.683
PGSC0003DMG400008352 Solanum tuberosum PGSC0003DMG400008352 N 0.682
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.682
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.682
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.680
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.678