POPTR_0013s15440 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0013s15440 T004717_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.722 0.780
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.715 0.780
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.715 0.780
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.715 0.780
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.704 0.760
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.704 0.820
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.688 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s15440.1 AP2 132 183

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.770
GLYMA02G40320 Glycine max GLYMA02G40320 I 0.767
28641.m000082 Ricinus communis 28641.m000082 I 0.765
SapurV1A.1111s0070 Salix purpurea SapurV1A.1111s0070 I 0.765
cassava27467.m1 Manihot esculenta cassava27467.m1 I 0.764
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.757
Ca_05803 Cicer arietinum Ca_05803 I 0.750
MDP0000308379 Malus domestica MDP0000308379 I 0.750
MDP0000854039 Malus domestica MDP0000854039 I 0.750
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.748
Eucgr.A02669 Eucalyptus grandis Eucgr.A02669 I 0.748
POPTR_0015s06070 Populus trichocarpa POPTR_0015s06070 I 0.747
SapurV1A.1017s0070 Salix purpurea SapurV1A.1017s0070 I 0.747
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.745
GLYMA11G31401 Glycine max GLYMA11G31401 I 0.744
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.743
Ciclev10005220m.g Citrus clementina Ciclev10005220m.g I 0.742
orange1.1g047455m.g Citrus sinensis orange1.1g047455m.g I 0.742
PK28823.1 Cannabis sativa PK28823.1 I 0.742
GLYMA11G02140 Glycine max GLYMA11G02140 I 0.742
mgf018116m Mimulus guttatus mgf018116m I 0.742
Eucgr.K00321 Eucalyptus grandis Eucgr.K00321 I 0.741
cassava7228.valid.m1 Manihot esculenta cassava7228.valid.m1 I 0.741
VIT_16s0050g02400 Vitis vinifera VIT_16s0050g02400 I 0.741
30169.m006542 Ricinus communis 30169.m006542 I 0.741
Gorai.006G200400 Gossypium raimondii Gorai.006G200400 I 0.741
TCM_042300 Theobroma cacao TCM_042300 I 0.741
TCM_015336 Theobroma cacao TCM_015336 I 0.741
Solyc06g051840.1 Solanum lycopersicum Solyc06g051840.1 I 0.741
POPTR_0019s15190 Populus trichocarpa POPTR_0019s15190 I 0.741
POPTR_0012s01260 Populus trichocarpa POPTR_0012s01260 I 0.741
PGSC0003DMG400036493 Solanum tuberosum PGSC0003DMG400036493 I 0.741
PGSC0003DMG400002350 Solanum tuberosum PGSC0003DMG400002350 I 0.741
Gorai.008G271200 Gossypium raimondii Gorai.008G271200 I 0.741
Solyc03g007460.1 Solanum lycopersicum Solyc03g007460.1 I 0.741
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.740
Cla013632 Citrullus lanatus Cla013632 I 0.737
gene13118-v1.0-hybrid Fragaria vesca gene13118-v1.0-hybrid I 0.735
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.734
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.734
Gorai.009G355700 Gossypium raimondii Gorai.009G355700 I 0.734
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.734
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.734
TCM_032408 Theobroma cacao TCM_032408 I 0.734
GLYMA01G43350 Glycine max GLYMA01G43350 I 0.734
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.734
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.734
OS05G0316800 Oryza sativa OS05G0316800 N 0.734
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.733
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.733
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.733
SapurV1A.1442s0010 Salix purpurea SapurV1A.1442s0010 I 0.733
SapurV1A.1043s0120 Salix purpurea SapurV1A.1043s0120 I 0.733
SapurV1A.2151s0020 Salix purpurea SapurV1A.2151s0020 I 0.733
Carubv10001539m.g Capsella rubella Carubv10001539m.g I 0.732
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.732
AMTR_s00097p00165740 Amborella trichopoda AMTR_s00097p00165740 I 0.732
Cla004291 Citrullus lanatus Cla004291 I 0.732
CRF1 Arabidopsis thaliana AT4G11140 I 0.732
CRF1 Arabidopsis lyrata fgenesh2_kg.6__3086__AT4G11140.1 I 0.732
Bo3g045150 Brassica oleracea Bo3g045150 I 0.731
Bostr.25463s0212 Boechera stricta Bostr.25463s0212 I 0.731
Thhalv10029132m.g Eutrema salsugineum Thhalv10029132m.g I 0.731
MTR_3g090760 Medicago truncatula MTR_3g090760 I 0.730
Bra008460 Brassica rapa Bra008460 N 0.730
Ca_03948 Cicer arietinum Ca_03948 I 0.730
MDP0000190504 Malus domestica MDP0000190504 I 0.730
TCM_027348 Theobroma cacao TCM_027348 I 0.729
Pm013734 Prunus mume Pm013734 I 0.729
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.729
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.729
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.729
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.729
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.729
MDP0000264187 Malus domestica MDP0000264187 I 0.729
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.729
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.729
PRUPE_ppa008720mg Prunus persica PRUPE_ppa008720mg I 0.729
Pm019793 Prunus mume Pm019793 I 0.729
mgf023662m Mimulus guttatus mgf023662m I 0.729
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.729
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.728
Cla015583 Citrullus lanatus Cla015583 I 0.728
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.727
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.726
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.726
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.726
Ca_20041 Cicer arietinum Ca_20041 I 0.726
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.725
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.725
Pm000232 Prunus mume Pm000232 I 0.725
PRUPE_ppa025495mg Prunus persica PRUPE_ppa025495mg I 0.725
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.725
PRUPE_ppa022995mg Prunus persica PRUPE_ppa022995mg I 0.725
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.725
27446.m000475 Ricinus communis 27446.m000475 I 0.725
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.724
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.724
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.724
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.724
GLYMA08G02460 Glycine max GLYMA08G02460 I 0.724
TCM_005203 Theobroma cacao TCM_005203 I 0.723
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.723
Bostr.7867s0626 Boechera stricta Bostr.7867s0626 I 0.723
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.722
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.722
mgf022434m Mimulus guttatus mgf022434m I 0.722
CRF3 Arabidopsis thaliana AT5G53290 D 0.722
Ciclev10002183m.g Citrus clementina Ciclev10002183m.g I 0.722
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.722
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.722
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.722
orange1.1g043400m.g Citrus sinensis orange1.1g043400m.g I 0.722
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.721
Ca_15671 Cicer arietinum Ca_15671 I 0.721
chr2.CM0060.150.nc Lotus japonicus chr2.CM0060.150.nc I 0.721
Bo2g045930 Brassica oleracea Bo2g045930 I 0.721
Ca_08911 Cicer arietinum Ca_08911 N 0.721
Ca_08913 Cicer arietinum Ca_08913 N 0.721
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.721
Bo9g111050 Brassica oleracea Bo9g111050 I 0.721
SapurV1A.4828s0010 Salix purpurea SapurV1A.4828s0010 I 0.721
SapurV1A.0215s0310 Salix purpurea SapurV1A.0215s0310 I 0.721
Bra022643 Brassica rapa Bra022643 I 0.721
Bra003068 Brassica rapa Bra003068 I 0.721
mgf023807m Mimulus guttatus mgf023807m I 0.719
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.717
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.717
evm.TU.supercontig_2.277 Carica papaya evm.TU.supercontig_2.277 I 0.716
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.716
Cagra.16778s0005 Capsella grandiflora Cagra.16778s0005 I 0.716
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.715
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.715
CRF4 Arabidopsis thaliana AT4G27950 D 0.715
Gorai.006G208200 Gossypium raimondii Gorai.006G208200 I 0.714
Cla011108 Citrullus lanatus Cla011108 I 0.714
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.714
GSMUA_Achr11G19880_001 Musa acuminata GSMUA_Achr11G19880_001 I 0.713
Pm013049 Prunus mume Pm013049 I 0.712
Solyc06g082590.1 Solanum lycopersicum Solyc06g082590.1 I 0.711
PGSC0003DMG400030472 Solanum tuberosum PGSC0003DMG400030472 I 0.710
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.709
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.708
CRF2 Arabidopsis thaliana AT4G23750 D 0.708
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.708
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.708
Thhalv10025693m.g Eutrema salsugineum Thhalv10025693m.g I 0.708
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.708
MDP0000229285 Malus domestica MDP0000229285 I 0.705
GLYMA19G44240 Glycine max GLYMA19G44240 I 0.705
MDP0000783818 Malus domestica MDP0000783818 I 0.705
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.704
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.704
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.704
ERF084 Arabidopsis thaliana AT1G80580 N 0.704
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.704
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.704
O65242_TOBAC Nicotiana tabacum O65242_TOBAC D 0.704
Bra029079 Brassica rapa Bra029079 I 0.703
POPTR_0014s09020 Populus trichocarpa POPTR_0014s09020 I 0.703
Bo3g022760 Brassica oleracea Bo3g022760 I 0.703
orange1.1g036154m.g Citrus sinensis orange1.1g036154m.g I 0.702
POPTR_0001s10300 Populus trichocarpa POPTR_0001s10300 I 0.702
Cla011573 Citrullus lanatus Cla011573 I 0.702
Gorai.004G135700 Gossypium raimondii Gorai.004G135700 I 0.702
Gorai.008G252300 Gossypium raimondii Gorai.008G252300 I 0.702
PK16787.1 Cannabis sativa PK16787.1 I 0.702
TCM_016396 Theobroma cacao TCM_016396 I 0.702
Solyc08g081960.1 Solanum lycopersicum Solyc08g081960.1 I 0.702
PRUPE_ppa025804mg Prunus persica PRUPE_ppa025804mg I 0.702
Pm024096 Prunus mume Pm024096 I 0.702
PGSC0003DMG400012305 Solanum tuberosum PGSC0003DMG400012305 I 0.702
Ciclev10021073m.g Citrus clementina Ciclev10021073m.g I 0.702
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.702
cassava39307.m1 Manihot esculenta cassava39307.m1 I 0.702
cassava12291.valid.m1 Manihot esculenta cassava12291.valid.m1 I 0.702
Cucsa.303720 Cucumis sativus Cucsa.303720 I 0.702
evm.TU.supercontig_122.27 Carica papaya evm.TU.supercontig_122.27 I 0.701
mgf021650m Mimulus guttatus mgf021650m I 0.701
gene28067-v1.0-hybrid Fragaria vesca gene28067-v1.0-hybrid I 0.700
SapurV1A.0013s0740 Salix purpurea SapurV1A.0013s0740 I 0.700
28049.m000300 Ricinus communis 28049.m000300 I 0.699
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.699
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.699
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.699
Cucsa.201950 Cucumis sativus Cucsa.201950 I 0.698
Cucsa.118840 Cucumis sativus Cucsa.118840 I 0.698
GLYMA16G08683 Glycine max GLYMA16G08683 I 0.697
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.696
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.696
gene18922-v1.0-hybrid Fragaria vesca gene18922-v1.0-hybrid I 0.695
BGIOSGA009571 Oryza indica BGIOSGA009571 I 0.695
OGLUM03G38530 Oryza glumaepatula OGLUM03G38530 I 0.695
ORGLA03G0354400 Oryza glaberrima ORGLA03G0354400 I 0.695
OS03G0815800 Oryza sativa OS03G0815800 I 0.695
ORUFI03G40350 Oryza rufipogon ORUFI03G40350 I 0.695
OMERI03G35630 Oryza meridionalis OMERI03G35630 I 0.695
ONIVA03G40360 Oryza nivara ONIVA03G40360 I 0.695
OBART03G38710 Oryza barthii OBART03G38710 I 0.695
GLYMA05G37120 Glycine max GLYMA05G37120 I 0.694
Gorai.008G123400 Gossypium raimondii Gorai.008G123400 I 0.694
POPTR_0003s13610 Populus trichocarpa POPTR_0003s13610 I 0.694
SapurV1A.0237s0040 Salix purpurea SapurV1A.0237s0040 I 0.694
mgf008137m Mimulus guttatus mgf008137m I 0.694
evm.TU.supercontig_3.43 Carica papaya evm.TU.supercontig_3.43 I 0.694
30190.m010791 Ricinus communis 30190.m010791 I 0.694
Lus10032353.g Linum usitatissimum Lus10032353.g I 0.693
GSMUA_Achr5G27850_001 Musa acuminata GSMUA_Achr5G27850_001 I 0.693
Lus10033938.g Linum usitatissimum Lus10033938.g I 0.693
POPTR_0002s16900 Populus trichocarpa POPTR_0002s16900 I 0.693
BRADI3G38140 Brachypodium distachyon BRADI3G38140 I 0.692
CRF6 Arabidopsis thaliana AT3G61630 I 0.692
SapurV1A.0099s0060 Salix purpurea SapurV1A.0099s0060 I 0.692
Si014237m.g Setaria italica Si014237m.g I 0.692
GLYMA03G41640 Glycine max GLYMA03G41640 I 0.691
OPUNC03G35790 Oryza punctata OPUNC03G35790 I 0.691
Cla004992 Citrullus lanatus Cla004992 I 0.689
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.689
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.689
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.689
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.689
OGLUM08G18720 Oryza glumaepatula OGLUM08G18720 I 0.688
OLONG_013554 Oryza longistaminata OLONG_013554 I 0.688
ONIVA08G19930 Oryza nivara ONIVA08G19930 I 0.688
LOC_Os08g36920 Oryza sativa LOC_Os08g36920 D 0.688
OS08G0474000 Oryza sativa OS08G0474000 I 0.688
Bo4g009400 Brassica oleracea Bo4g009400 I 0.688
OB08G25030 Oryza brachyantha OB08G25030 I 0.688
mgf019903m Mimulus guttatus mgf019903m I 0.688
OPUNC08G15760 Oryza punctata OPUNC08G15760 I 0.688
Thhalv10026857m.g Eutrema salsugineum Thhalv10026857m.g I 0.688
Pavir.Fa00656 Panicum virgatum Pavir.Fa00656 I 0.688
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.687
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.686
Bo1g037170 Brassica oleracea Bo1g037170 I 0.685
Bo7g109100 Brassica oleracea Bo7g109100 I 0.685
Bra013730 Brassica rapa Bra013730 I 0.685
Bra019270 Brassica rapa Bra019270 I 0.685
BRADI2G31480 Brachypodium distachyon BRADI2G31480 I 0.684
SapurV1A.0035s0790 Salix purpurea SapurV1A.0035s0790 I 0.684
evm.TU.supercontig_194.13 Carica papaya evm.TU.supercontig_194.13 I 0.684
Bo8g053000 Brassica oleracea Bo8g053000 I 0.683
Sb07g023030 Sorghum bicolor Sb07g023030 I 0.683
Bra026295 Brassica rapa Bra026295 I 0.683
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.683
GLYMA13G08490 Glycine max GLYMA13G08490 I 0.683
CRF5 Arabidopsis thaliana AT2G46310 I 0.683
Bra010389 Brassica rapa Bra010389 I 0.683
GRMZM2G369472 Zea mays GRMZM2G369472 I 0.683
Bo1g051080 Brassica oleracea Bo1g051080 I 0.683
Pavir.J19559 Panicum virgatum Pavir.J19559 I 0.682
Gorai.003G082200 Gossypium raimondii Gorai.003G082200 I 0.682
Bra004548 Brassica rapa Bra004548 I 0.681
Bo2g095830 Brassica oleracea Bo2g095830 N 0.680
MDP0000279943 Malus domestica MDP0000279943 I 0.680
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.679
Ca_15022 Cicer arietinum Ca_15022 I 0.677
MLOC_40486 Hordeum vulgare MLOC_40486 I 0.677
MTR_5g009620 Medicago truncatula MTR_5g009620 I 0.677
Cla021505 Citrullus lanatus Cla021505 I 0.677
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.677
Cucsa.258900 Cucumis sativus Cucsa.258900 I 0.677