POPTR_0019s15190 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0019s15190 T004761_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.786 0.780
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.781 0.780
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.781 0.780
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.781 0.780
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.781 0.780
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.759 0.820
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.744 0.740
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.740 0.760
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.732 0.740
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.731 0.740
ERF069
M01604_2.00
Arabidopsis thaliana
NNGCCGNNN

NNNCGGCNN
PBM
Weirauch et al.(2014)
pTH7550
0.729 0.760
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.726 0.700
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.726 0.700
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.726 0.700
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.714 0.640
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.714 0.640
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.713 0.720
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.712 0.720
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.709 0.640
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.701 0.680
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.701 0.680
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.701 0.680
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.701 0.660
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.694 0.640
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.694 0.640
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY

RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.693 0.660
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.692 0.660
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.691 0.640
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.691 0.640
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.688 0.680
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.688 0.680
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.688 0.680
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.686 0.640
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.686 0.640
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.685 0.680
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.685 0.680
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.684 0.640
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.684 0.640
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.684 0.640
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.680 0.620
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.680 0.620
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.680 0.660
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.680 0.660
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.680 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s15190.1 AP2 126 177

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

1411 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30063.m001417 Ricinus communis 30063.m001417 I 0.000
AMTR_s00059p00187950 Amborella trichopoda AMTR_s00059p00187950 I 0.000
AMTR_s00099p00163300 Amborella trichopoda AMTR_s00099p00163300 I 0.000
ANAC034 Vitis vinifera VIT_12s0035g02020 I 0.000
ANAC034 Arabidopsis lyrata fgenesh2_kg.5__152__AT2G02450.1 I 0.000
Aquca_014_00018 Aquilegia coerulea Aquca_014_00018 I 0.000
BGIOSGA004950 Oryza indica BGIOSGA004950 I 0.000
BGIOSGA004951 Oryza indica BGIOSGA004951 I 0.000
BGIOSGA018041 Oryza indica BGIOSGA018041 I 0.000
BGIOSGA027877 Oryza indica BGIOSGA027877 I 0.000
Bo2g136280 Brassica oleracea Bo2g136280 I 0.000
Bo7g080470 Brassica oleracea Bo7g080470 I 0.000
Bo9g071690 Brassica oleracea Bo9g071690 I 0.000
Bostr.0556s0069 Boechera stricta Bostr.0556s0069 I 0.000
Bra017416 Brassica rapa Bra017416 I 0.000
Bra024818 Brassica rapa Bra024818 I 0.000
Bra026595 Brassica rapa Bra026595 I 0.000
BRADI2G25150 Brachypodium distachyon BRADI2G25150 I 0.000
BRADI2G57297 Brachypodium distachyon BRADI2G57297 I 0.000
Cagra.0534s0046 Capsella grandiflora Cagra.0534s0046 I 0.000
Carubv10017334m.g Capsella rubella Carubv10017334m.g I 0.000
cassava17150.m1 Manihot esculenta cassava17150.m1 I 0.000
cassava23178.valid.m1 Manihot esculenta cassava23178.valid.m1 I 0.000
Ca_18171 Cicer arietinum Ca_18171 I 0.000
chr4.CM0525.60.nd Lotus japonicus chr4.CM0525.60.nd I 0.000
Ciclev10001346m.g Citrus clementina Ciclev10001346m.g I 0.000
Ciclev10001401m.g Citrus clementina Ciclev10001401m.g I 0.000
Cla004630 Citrullus lanatus Cla004630 I 0.000
Cucsa.260400 Cucumis sativus Cucsa.260400 I 0.000
Eucgr.G00054 Eucalyptus grandis Eucgr.G00054 I 0.000
F775_01256 Aegilops tauschii F775_01256 I 0.000
F775_03877 Aegilops tauschii F775_03877 I 0.000
gene29260-v1.0-hybrid Fragaria vesca gene29260-v1.0-hybrid I 0.000
GLYMA07G40140 Glycine max GLYMA07G40140 I 0.000
GLYMA17G00650 Glycine max GLYMA17G00650 I 0.000
Gorai.010G142400 Gossypium raimondii Gorai.010G142400 I 0.000
Gorai.011G090000 Gossypium raimondii Gorai.011G090000 I 0.000
GRMZM2G134687 Zea mays GRMZM2G134687 I 0.000
GRMZM2G147867 Zea mays GRMZM2G147867 I 0.000
GRMZM5G813651 Zea mays GRMZM5G813651 I 0.000
GSMUA_Achr10G04320_001 Musa acuminata GSMUA_Achr10G04320_001 I 0.000
GSMUA_Achr10G10690_001 Musa acuminata GSMUA_Achr10G10690_001 I 0.000
GSMUA_Achr11G08970_001 Musa acuminata GSMUA_Achr11G08970_001 I 0.000
GSMUA_Achr3G21690_001 Musa acuminata GSMUA_Achr3G21690_001 I 0.000
GSMUA_Achr5G17060_001 Musa acuminata GSMUA_Achr5G17060_001 I 0.000
GSMUA_Achr7G23650_001 Musa acuminata GSMUA_Achr7G23650_001 I 0.000
LPERR01G34330 Leersia perrieri LPERR01G34330 I 0.000
LPERR05G13320 Leersia perrieri LPERR05G13320 I 0.000
LPERR08G01330 Leersia perrieri LPERR08G01330 I 0.000
Lus10003367.g Linum usitatissimum Lus10003367.g I 0.000
Lus10008419.g Linum usitatissimum Lus10008419.g I 0.000
Lus10008420.g Linum usitatissimum Lus10008420.g I 0.000
Lus10008897.g Linum usitatissimum Lus10008897.g I 0.000
Lus10023208.g Linum usitatissimum Lus10023208.g I 0.000
MDP0000189394 Malus domestica MDP0000189394 I 0.000
MDP0000679946 Malus domestica MDP0000679946 I 0.000
mgf015326m Mimulus guttatus mgf015326m I 0.000
MLOC_57215 Hordeum vulgare MLOC_57215 I 0.000
MLOC_69621 Hordeum vulgare MLOC_69621 I 0.000
MTR_4g134460 Medicago truncatula MTR_4g134460 I 0.000
NAC035 Arabidopsis thaliana AT2G02450 D 0.000
OB01G48600 Oryza brachyantha OB01G48600 I 0.000
OB05G24670 Oryza brachyantha OB05G24670 I 0.000
OB08G11180 Oryza brachyantha OB08G11180 I 0.000
OBART01G39900 Oryza barthii OBART01G39900 I 0.000
OBART05G16760 Oryza barthii OBART05G16760 I 0.000
OBART08G01010 Oryza barthii OBART08G01010 I 0.000
OGLUM01G44090 Oryza glumaepatula OGLUM01G44090 I 0.000
OGLUM05G17770 Oryza glumaepatula OGLUM05G17770 I 0.000
OGLUM08G01070 Oryza glumaepatula OGLUM08G01070 I 0.000
OLONG_011893 Oryza longistaminata OLONG_011893 I 0.000
OLONG_025605 Oryza longistaminata OLONG_025605 I 0.000
OMERI05G14550 Oryza meridionalis OMERI05G14550 I 0.000
OMERI08G01230 Oryza meridionalis OMERI08G01230 I 0.000
ONIVA01G44740 Oryza nivara ONIVA01G44740 I 0.000
ONIVA05G17420 Oryza nivara ONIVA05G17420 I 0.000
ONIVA08G01010 Oryza nivara ONIVA08G01010 I 0.000
OPUNC01G38590 Oryza punctata OPUNC01G38590 I 0.000
OPUNC05G14760 Oryza punctata OPUNC05G14760 I 0.000
OPUNC08G00950 Oryza punctata OPUNC08G00950 I 0.000
orange1.1g016095m.g Citrus sinensis orange1.1g016095m.g I 0.000
orange1.1g046996m.g Citrus sinensis orange1.1g046996m.g I 0.000
ORGLA01G0337900 Oryza glaberrima ORGLA01G0337900 I 0.000
ORGLA05G0144900 Oryza glaberrima ORGLA05G0144900 I 0.000
ORGLA08G0004000 Oryza glaberrima ORGLA08G0004000 I 0.000
ORUFI01G43220 Oryza rufipogon ORUFI01G43220 I 0.000
ORUFI05G17970 Oryza rufipogon ORUFI05G17970 I 0.000
ORUFI08G01040 Oryza rufipogon ORUFI08G01040 I 0.000
OS01G0888300 Oryza sativa OS01G0888300 I 0.000
OS05G0418800 Oryza sativa OS05G0418800 I 0.000
Pavir.Ea03596 Panicum virgatum Pavir.Ea03596 I 0.000
Pavir.Fa02204 Panicum virgatum Pavir.Fa02204 N 0.000
Pavir.J00477 Panicum virgatum Pavir.J00477 I 0.000
Pavir.J03312 Panicum virgatum Pavir.J03312 I 0.000
Pavir.J07491 Panicum virgatum Pavir.J07491 I 0.000
PDK_20s1594511g001 Phoenix dactylifera PDK_20s1594511g001 I 0.000
PGSC0003DMG400018262 Solanum tuberosum PGSC0003DMG400018262 I 0.000
PK24240.1 Cannabis sativa PK24240.1 I 0.000
Pm003809 Prunus mume Pm003809 I 0.000
POPTR_0003s03670 Populus trichocarpa POPTR_0003s03670 I 0.000
POPTR_0004s23970 Populus trichocarpa POPTR_0004s23970 I 0.000
PRUPE_ppa021989m2g Prunus persica PRUPE_ppa021989m2g I 0.000
SapurV1A.0847s0050 Salix purpurea SapurV1A.0847s0050 I 0.000
Sb03g042210 Sorghum bicolor Sb03g042210 I 0.000
Sb09g020590 Sorghum bicolor Sb09g020590 I 0.000
Si001651m.g Setaria italica Si001651m.g I 0.000
Si013995m.g Setaria italica Si013995m.g N 0.000
Si022103m.g Setaria italica Si022103m.g I 0.000
Solyc01g102740.2 Solanum lycopersicum Solyc01g102740.2 I 0.000
TCM_027945 Theobroma cacao TCM_027945 I 0.000
Thhalv10004330m.g Eutrema salsugineum Thhalv10004330m.g I 0.000
TRAES3BF097200010CFD_g Triticum aestivum TRAES3BF097200010CFD_g I 0.000
TRAES3BF098000010CFD_g Triticum aestivum TRAES3BF098000010CFD_g I 0.000
TRAES3BF114300070CFD_g Triticum aestivum TRAES3BF114300070CFD_g I 0.000
Traes_3AL_490F09661 Triticum aestivum Traes_3AL_490F09661 I 0.000
TRIUR3_28413 Triticum urartu TRIUR3_28413 I 0.000
TRIUR3_29543 Triticum urartu TRIUR3_29543 I 0.000