Sb06g025900 (Sorghum bicolor)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Sb06g025900 T005026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.826 0.960
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.797 0.940
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.797 0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.690 0.760
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.690 0.760
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.690 0.760
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.689 0.800
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.689 0.800
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.689 0.800
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.689 0.800
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.689 0.800
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.689 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb06g025900.1 AP2 56 107

Links

Other AP2 family TFs
Other Sorghum bicolor TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA003124 Oryza indica BGIOSGA003124 N 0.000
BRADI2G08480 Brachypodium distachyon BRADI2G08480 N 0.000
GRMZM2G180319 Zea mays GRMZM2G180319 N 0.000
LPERR01G08470 Leersia perrieri LPERR01G08470 N 0.000
OBART01G08980 Oryza barthii OBART01G08980 N 0.000
OGLUM01G10300 Oryza glumaepatula OGLUM01G10300 N 0.000
OMERI01G09040 Oryza meridionalis OMERI01G09040 N 0.000
ONIVA01G11590 Oryza nivara ONIVA01G11590 N 0.000
OPUNC01G08860 Oryza punctata OPUNC01G08860 N 0.000
ORGLA01G0080800 Oryza glaberrima ORGLA01G0080800 N 0.000
ORUFI01G09790 Oryza rufipogon ORUFI01G09790 N 0.000
OS01G0242400 Oryza sativa OS01G0242400 N 0.000
Pavir.J38430 Panicum virgatum Pavir.J38430 N 0.000
Sb10g029595 Sorghum bicolor Sb10g029595 N 0.000
Si005134m.g Setaria italica Si005134m.g N 0.000
TRAES3BF081300020CFD_g Triticum aestivum TRAES3BF081300020CFD_g N 0.000