Sb07g020090 (Sorghum bicolor)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Sb07g020090 T005039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN

NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.851 0.960
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.838 0.940
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.838 0.940
AT5G65130
M06686_2.00
Arabidopsis thaliana
YCDYCDCCRCCGCCN

NGGCGGYGGHGRHGR
Dap-seq
OMalley et al.(2016)
At5g65130_col_a
0.722 0.860
AT5G65130
M06687_2.00
Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW

WKGKCGGYGSHDNNDNNNN
Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a
0.722 0.860
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.685 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb07g020090.1 AP2 90 141

Links

Other AP2 family TFs
Other Sorghum bicolor TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R010877 Calypte anna Aan_R010877 N 0.000
Afo_R009710 Aptenodytes forsteri Afo_R009710 N 0.000
ENSAMXG00000005528 Astyanax mexicanus ENSAMXG00000005528 N 0.000
ENSAPLG00000016290 Anas platyrhynchos ENSAPLG00000016290 N 0.000
ENSFALG00000001349 Ficedula albicollis ENSFALG00000001349 N 0.000
ENSGALG00000001345 Gallus gallus ENSGALG00000001345 N 0.000
ENSGMOG00000015112 Gadus morhua ENSGMOG00000015112 N 0.000
ENSLACG00000008848 Latimeria chalumnae ENSLACG00000008848 N 0.000
ENSLOCG00000004154 Lepisosteus oculatus ENSLOCG00000004154 N 0.000
ENSLOCG00000004175 Lepisosteus oculatus ENSLOCG00000004175 N 0.000
ENSMGAG00000002349 Meleagris gallopavo ENSMGAG00000002349 N 0.000
ENSONIG00000006099 Oreochromis niloticus ENSONIG00000006099 N 0.000
ENSPFOG00000016946 Poecilia formosa ENSPFOG00000016946 N 0.000
ENSPSIG00000008427 Pelodiscus sinensis ENSPSIG00000008427 N 0.000
ENSTGUG00000000758 Taeniopygia guttata ENSTGUG00000000758 N 0.000
ENSXMAG00000013080 Xiphophorus maculatus ENSXMAG00000013080 N 0.000
Gfo_R008942 Geospiza fortis Gfo_R008942 N 0.000
l3mbtl1b Oryzias latipes ENSORLG00000009102 N 0.000
l3mbtl1b Danio rerio ENSDARG00000074346 N 0.000
l3mbtl1b Gasterosteus aculeatus ENSGACG00000009206 N 0.000
l3mbtl1b Takifugu rubripes ENSTRUG00000008264 N 0.000
l3mbtl1b Tetraodon nigroviridis ENSTNIG00000018364 N 0.000
l3mbtl3 Xenopus tropicalis XB-GENE-1219135 N 0.000
l3mbtl3.S Xenopus laevis XB-GENE-1219139 N 0.000
Ogr03652 Ophisaurus gracilis Ogr03652 N 0.000
Pvit_13740 Pogona vitticeps Pvit_13740 N 0.000
Tal_R003526 Tyto alba Tal_R003526 N 0.000