scaffold_103754.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_103754.1 T005086_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.682 0.720
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.682 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_103754.1 AP2 18 69

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.786
Bo8g027240 Brassica oleracea Bo8g027240 I 0.781
Bra028009 Brassica rapa Bra028009 I 0.780
Bo6g046850 Brassica oleracea Bo6g046850 I 0.778
ERF022 Arabidopsis thaliana AT1G33760 I 0.777
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.774
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.766
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.763
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.746
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.741
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.739
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.738
TCM_036269 Theobroma cacao TCM_036269 I 0.738
Bra010210 Brassica rapa Bra010210 I 0.737
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.734
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.733
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.732
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.729
MDP0000122740 Malus domestica MDP0000122740 I 0.729
MDP0000151428 Malus domestica MDP0000151428 I 0.729
MDP0000122739 Malus domestica MDP0000122739 I 0.729
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.728
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.728
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.728
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.727
28118.m000034 Ricinus communis 28118.m000034 I 0.726
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.726
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.725
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.725
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.723
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.723
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.722
Pm004272 Prunus mume Pm004272 I 0.721
Bo5g086680 Brassica oleracea Bo5g086680 I 0.721
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.721
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.720
TCM_036270 Theobroma cacao TCM_036270 I 0.720
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.720
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.719
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.719
Pm004269 Prunus mume Pm004269 I 0.719
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.719
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.719
Cla012665 Citrullus lanatus Cla012665 I 0.718
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.717
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.716
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.713
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.713
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.713
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.711
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.711
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.710
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.710
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.710
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.710
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.708
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.708
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.707
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.706
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.704
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.704
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.704
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.704
27805.m000021 Ricinus communis 27805.m000021 I 0.702
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.702
MDP0000283350 Malus domestica MDP0000283350 I 0.701
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.699
Cla012661 Citrullus lanatus Cla012661 I 0.699
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.698
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.697
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.688
Si026882m.g Setaria italica Si026882m.g I 0.685
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.685
F775_17299 Aegilops tauschii F775_17299 I 0.684
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.684
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.684
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.684
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.684
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.684
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.684
Bra007975 Brassica rapa Bra007975 I 0.682
Bo2g072910 Brassica oleracea Bo2g072910 I 0.682
ERF021 Arabidopsis thaliana AT1G71450 D 0.682
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.682
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.682
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.682
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.682
OB11G16300 Oryza brachyantha OB11G16300 I 0.680
Ca_15064 Cicer arietinum Ca_15064 I 0.678
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.678
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.677