HRD (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_402264.1 T005098_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF024
M01614_2.00 		Arabidopsis thaliana
NNRCCGHCN
NGDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8206 		0.817 0.980
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_402264.1 AP2 13 65

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF024 Arabidopsis thaliana AT2G36450 D 0.817
Bo4g034600 Brassica oleracea Bo4g034600 I 0.812
Bostr.23794s0446 Boechera stricta Bostr.23794s0446 I 0.812
Thhalv10017537m.g Eutrema salsugineum Thhalv10017537m.g I 0.778
Carubv10024954m.g Capsella rubella Carubv10024954m.g I 0.776
Bra017235 Brassica rapa Bra017235 I 0.776
Cagra.0228s0035 Capsella grandiflora Cagra.0228s0035 I 0.776
Bo4g186300 Brassica oleracea Bo4g186300 I 0.756
Bra023070 Brassica rapa Bra023070 I 0.752
Bo3g030140 Brassica oleracea Bo3g030140 I 0.752
Solyc10g083560.1 Solanum lycopersicum Solyc10g083560.1 I 0.698
PGSC0003DMG400045042 Solanum tuberosum PGSC0003DMG400045042 I 0.696