scaffold_500470.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_500470.1 T005101_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF119
M01093_2.00 		Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN		 PBM
Lambert et al.(2019)
pTH11551 		0.782 0.922
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.713 0.765
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.713 0.765
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.713 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_500470.1 AP2 128 179

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.6197s0021 Capsella grandiflora Cagra.6197s0021 I 0.810
Carubv10017565m.g Capsella rubella Carubv10017565m.g I 0.806
Thhalv10004526m.g Eutrema salsugineum Thhalv10004526m.g I 0.792
Bostr.0556s0264 Boechera stricta Bostr.0556s0264 I 0.792
Bra025170 Brassica rapa Bra025170 I 0.791
Bo7g082250 Brassica oleracea Bo7g082250 I 0.791
ERF119 Arabidopsis thaliana AT3G25890 D 0.782
Bra036360 Brassica rapa Bra036360 I 0.781
Bo2g138790 Brassica oleracea Bo2g138790 I 0.763
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.737
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.730
evm.TU.supercontig_1.178 Carica papaya evm.TU.supercontig_1.178 I 0.722
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.720
TCM_011811 Theobroma cacao TCM_011811 I 0.720
ERF118 Arabidopsis thaliana AT1G68550 D 0.713
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.712
Bra004318 Brassica rapa Bra004318 N 0.677
Bo6g106990 Brassica oleracea Bo6g106990 N 0.677