CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SELMODRAFT_72880
(
Selaginella moellendorffii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
SELMODRAFT_72880
T005193_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.728
0.870
OS05G0497200
M01636_2.00
Oryza sativa
CGSCGCCR
YGGCGSCG
PBM
Weirauch et al.(2014)
pTH8640
0.721
0.804
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.684
0.804
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.684
0.804
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.684
0.804
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.682
0.739
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.682
0.739
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.682
0.739
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFJ25217
AP2
6
56
QHFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEQAARAYDKAAFSLRG
Links
Other
AP2
family TFs
Other
Selaginella moellendorffii
TFs
203 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SELMODRAFT_73144
Selaginella moellendorffii
SELMODRAFT_73144
I
0.818
MDP0000457509
Malus domestica
MDP0000457509
I
0.753
MDP0000310904
Malus domestica
MDP0000310904
I
0.752
MDP0000236605
Malus domestica
MDP0000236605
I
0.752
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.750
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.744
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.743
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.743
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.739
PK02998.1
Cannabis sativa
PK02998.1
I
0.739
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.739
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.738
Ca_12205
Cicer arietinum
Ca_12205
I
0.736
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.735
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.734
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.734
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.734
Pm020210
Prunus mume
Pm020210
I
0.734
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.733
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.733
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.733
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.732
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.731
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.731
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.729
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.728
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.728
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.728
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.728
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.728
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.728
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.728
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.728
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.728
30190.m011323
Ricinus communis
30190.m011323
I
0.728
Pm010083
Prunus mume
Pm010083
I
0.728
Cla020002
Citrullus lanatus
Cla020002
I
0.728
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.728
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.728
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.728
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.728
PK17878.1
Cannabis sativa
PK17878.1
D
0.728
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.728
Ca_00326
Cicer arietinum
Ca_00326
I
0.728
mgf023367m
Mimulus guttatus
mgf023367m
I
0.728
TCM_029823
Theobroma cacao
TCM_029823
I
0.728
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.728
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.728
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.728
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.728
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.728
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.727
MTR_5g085070
Medicago truncatula
MTR_5g085070
I
0.725
SELMODRAFT_443461
Selaginella moellendorffii
SELMODRAFT_443461
I
0.724
SELMODRAFT_430375
Selaginella moellendorffii
SELMODRAFT_430375
I
0.724
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.723
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.723
OPUNC05G19220
Oryza punctata
OPUNC05G19220
I
0.721
ORUFI05G22840
Oryza rufipogon
ORUFI05G22840
I
0.721
ORGLA05G0187500
Oryza glaberrima
ORGLA05G0187500
I
0.721
OS05G0497200
Oryza sativa
OS05G0497200
D
0.721
OGLUM05G22780
Oryza glumaepatula
OGLUM05G22780
I
0.721
LPERR05G17470
Leersia perrieri
LPERR05G17470
I
0.721
BGIOSGA017797
Oryza indica
BGIOSGA017797
I
0.721
OMERI05G19480
Oryza meridionalis
OMERI05G19480
I
0.721
ONIVA05G22260
Oryza nivara
ONIVA05G22260
I
0.721
TRAES3BF075600040CFD_g
Triticum aestivum
TRAES3BF075600040CFD_g
I
0.716
BRADI2G52380
Brachypodium distachyon
BRADI2G52380
I
0.716
Si003053m.g
Setaria italica
Si003053m.g
I
0.716
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.715
MLOC_66843
Hordeum vulgare
MLOC_66843
I
0.714
Bo3g143340
Brassica oleracea
Bo3g143340
I
0.713
Cagra.1822s0023
Capsella grandiflora
Cagra.1822s0023
I
0.713
Bo5g055840
Brassica oleracea
Bo5g055840
I
0.713
Carubv10011585m.g
Capsella rubella
Carubv10011585m.g
I
0.713
Thhalv10009947m.g
Eutrema salsugineum
Thhalv10009947m.g
I
0.713
ERF12
Arabidopsis thaliana
AT1G28360
I
0.713
Bra030094
Brassica rapa
Bra030094
I
0.713
Bra010881
Brassica rapa
Bra010881
I
0.713
Bra032898
Brassica rapa
Bra032898
I
0.713
Bo7g048190
Brassica oleracea
Bo7g048190
I
0.713
Bostr.15697s0156
Boechera stricta
Bostr.15697s0156
I
0.713
ERF12
Arabidopsis lyrata
fgenesh2_kg.1__3004__AT1G28360.1
I
0.713
SELMODRAFT_86738
Selaginella moellendorffii
SELMODRAFT_86738
I
0.712
GLYMA09G37780
Glycine max
GLYMA09G37780
I
0.712
GLYMA18G48730
Glycine max
GLYMA18G48730
I
0.712
SELMODRAFT_68470
Selaginella moellendorffii
SELMODRAFT_68470
I
0.712
SELMODRAFT_59974
Selaginella moellendorffii
SELMODRAFT_59974
I
0.710
MTR_1g074310
Medicago truncatula
MTR_1g074310
I
0.710
gene21403-v1.0-hybrid
Fragaria vesca
gene21403-v1.0-hybrid
I
0.709
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.709
Bo5g004090
Brassica oleracea
Bo5g004090
I
0.709
gw1.37.164.1
Physcomitrella patens
gw1.37.164.1
I
0.708
Cucsa.190200
Cucumis sativus
Cucsa.190200
I
0.706
Cla003319
Citrullus lanatus
Cla003319
I
0.706
Gorai.009G165500
Gossypium raimondii
Gorai.009G165500
I
0.703
Pavir.Ea03148
Panicum virgatum
Pavir.Ea03148
I
0.703
GLYMA20G34560
Glycine max
GLYMA20G34560
I
0.702
GLYMA10G33070
Glycine max
GLYMA10G33070
I
0.702
Bo6g029320
Brassica oleracea
Bo6g029320
I
0.702
Cla013723
Citrullus lanatus
Cla013723
I
0.702
Bra038107
Brassica rapa
Bra038107
I
0.702
Ca_12080
Cicer arietinum
Ca_12080
I
0.700
TCM_030804
Theobroma cacao
TCM_030804
I
0.699
Gorai.009G443400
Gossypium raimondii
Gorai.009G443400
I
0.698
gw1.25.154.1
Physcomitrella patens
gw1.25.154.1
I
0.696
MTR_2g015050
Medicago truncatula
MTR_2g015050
I
0.696
Si014474m.g
Setaria italica
Si014474m.g
I
0.695
Sb03g037085
Sorghum bicolor
Sb03g037085
I
0.694
Cucsa.139820
Cucumis sativus
Cucsa.139820
I
0.694
VIT_19s0090g01080
Vitis vinifera
VIT_19s0090g01080
I
0.692
Pavir.Eb03165
Panicum virgatum
Pavir.Eb03165
I
0.692
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.690
Pm017696
Prunus mume
Pm017696
I
0.689
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.689
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.688
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.688
gw1.105.71.1
Physcomitrella patens
gw1.105.71.1
I
0.687
MTR_3g053690
Medicago truncatula
MTR_3g053690
I
0.687
Lus10039857.g
Linum usitatissimum
Lus10039857.g
I
0.687
Cagra.0381s0006
Capsella grandiflora
Cagra.0381s0006
I
0.686
MTR_5g085100
Medicago truncatula
MTR_5g085100
I
0.686
GRMZM2G132223
Zea mays
GRMZM2G132223
I
0.686
Carubv10027246m.g
Capsella rubella
Carubv10027246m.g
I
0.686
Ciclev10023393m.g
Citrus clementina
Ciclev10023393m.g
I
0.686
Bostr.0124s0109
Boechera stricta
Bostr.0124s0109
I
0.686
SELMODRAFT_19889
Selaginella moellendorffii
SELMODRAFT_19889
I
0.685
GRMZM2G089995
Zea mays
GRMZM2G089995
I
0.685
gw1.13.222.1
Physcomitrella patens
gw1.13.222.1
I
0.685
Si014469m.g
Setaria italica
Si014469m.g
I
0.685
ERF3
Arabidopsis thaliana
AT1G50640
D
0.684
gw1.2.361.1
Physcomitrella patens
gw1.2.361.1
I
0.684
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.684
Solyc03g006320.1
Solanum lycopersicum
Solyc03g006320.1
I
0.684
gene21165-v1.0-hybrid
Fragaria vesca
gene21165-v1.0-hybrid
I
0.683
TCM_005707
Theobroma cacao
TCM_005707
I
0.683
AMTR_s00021p00185480
Amborella trichopoda
AMTR_s00021p00185480
I
0.683
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.683
GRMZM2G020054
Zea mays
GRMZM2G020054
I
0.682
Sb07g006195
Sorghum bicolor
Sb07g006195
I
0.682
Cagra.3782s0036
Capsella grandiflora
Cagra.3782s0036
I
0.682
Sb07g006210
Sorghum bicolor
Sb07g006210
I
0.682
Sb07g006190
Sorghum bicolor
Sb07g006190
I
0.682
Carubv10027063m.g
Capsella rubella
Carubv10027063m.g
I
0.682
Gorai.002G092900
Gossypium raimondii
Gorai.002G092900
I
0.682
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.682
Bostr.15774s0261
Boechera stricta
Bostr.15774s0261
I
0.682
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.682
Sb07g006200
Sorghum bicolor
Sb07g006200
I
0.682
fgenesh2_kg.8__1005__AT5G51190.1
Arabidopsis lyrata
fgenesh2_kg.8__1005__AT5G51190.1
I
0.682
Cla005423
Citrullus lanatus
Cla005423
I
0.682
Thhalv10014591m.g
Eutrema salsugineum
Thhalv10014591m.g
I
0.682
ERF105
Arabidopsis thaliana
AT5G51190
D
0.682
GLYMA10G04190
Glycine max
GLYMA10G04190
I
0.681
TCM_005706
Theobroma cacao
TCM_005706
I
0.681
Eucgr.K00126
Eucalyptus grandis
Eucgr.K00126
I
0.681
Sb01g046920
Sorghum bicolor
Sb01g046920
I
0.681
GLYMA13G18400
Glycine max
GLYMA13G18400
I
0.681
AC198979.4_FG009
Zea mays
AC198979.4_FG009
I
0.681
Si039759m.g
Setaria italica
Si039759m.g
I
0.681
Pavir.Ib00287
Panicum virgatum
Pavir.Ib00287
I
0.681
Pavir.J22854
Panicum virgatum
Pavir.J22854
I
0.681
ONIVA03G03670
Oryza nivara
ONIVA03G03670
I
0.680
BGIOSGA011868
Oryza indica
BGIOSGA011868
I
0.680
OGLUM03G03790
Oryza glumaepatula
OGLUM03G03790
I
0.680
OLONG_008277
Oryza longistaminata
OLONG_008277
I
0.680
OBART03G03890
Oryza barthii
OBART03G03890
I
0.680
ORGLA03G0036700
Oryza glaberrima
ORGLA03G0036700
I
0.680
BRADI1G75040
Brachypodium distachyon
BRADI1G75040
I
0.680
GSMUA_Achr1G18230_001
Musa acuminata
GSMUA_Achr1G18230_001
I
0.680
LPERR03G03540
Leersia perrieri
LPERR03G03540
I
0.680
OS03G0150200
Oryza sativa
OS03G0150200
I
0.680
PGSC0003DMG400013257
Solanum tuberosum
PGSC0003DMG400013257
I
0.680
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.680
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.680
Cucsa.042770
Cucumis sativus
Cucsa.042770
I
0.680
e_gw1.265.11.1
Physcomitrella patens
e_gw1.265.11.1
I
0.680
ORUFI03G03630
Oryza rufipogon
ORUFI03G03630
I
0.680
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.679
cassava46560.m1
Manihot esculenta
cassava46560.m1
I
0.679
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.679
GRMZM2G066158
Zea mays
GRMZM2G066158
I
0.679
29983.m003147
Ricinus communis
29983.m003147
I
0.679
TRAES3BF046300130CFD_g
Triticum aestivum
TRAES3BF046300130CFD_g
I
0.679
MTR_1g069960
Medicago truncatula
MTR_1g069960
I
0.678
OPUNC03G03600
Oryza punctata
OPUNC03G03600
I
0.678
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.678
mgf007166m
Mimulus guttatus
mgf007166m
I
0.678
SapurV1A.0233s0380
Salix purpurea
SapurV1A.0233s0380
I
0.678
MDP0000830129
Malus domestica
MDP0000830129
I
0.678
gene01152-v1.0-hybrid
Fragaria vesca
gene01152-v1.0-hybrid
I
0.677
evm.TU.supercontig_12.251
Carica papaya
evm.TU.supercontig_12.251
I
0.677
gw1.130.147.1
Physcomitrella patens
gw1.130.147.1
I
0.677
Cagra.1472s0014
Capsella grandiflora
Cagra.1472s0014
I
0.677
AMTR_s00009p00147970
Amborella trichopoda
AMTR_s00009p00147970
I
0.677
Carubv10010374m.g
Capsella rubella
Carubv10010374m.g
I
0.677
Pm014953
Prunus mume
Pm014953
I
0.677
SapurV1A.0126s0320
Salix purpurea
SapurV1A.0126s0320
I
0.677
PRUPE_ppa010804mg
Prunus persica
PRUPE_ppa010804mg
I
0.677
SapurV1A.0126s0330
Salix purpurea
SapurV1A.0126s0330
I
0.677
MDP0000839828
Malus domestica
MDP0000839828
I
0.677
VIT_12s0059g01460
Vitis vinifera
VIT_12s0059g01460
I
0.677
mgf016282m
Mimulus guttatus
mgf016282m
I
0.677