Si018262m.g (Setaria italica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Si018262m.g T005301_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.847 0.960
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.847 0.960
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.798 0.940
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.740 0.820
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.740 0.820
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.740 0.820
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.740 0.820
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.705 0.760
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.705 0.760
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.705 0.760
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.704 0.800
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.704 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si018262m AP2 61 112

Links

Other AP2 family TFs
Other Setaria italica TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.847
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.847
OBART02G27760 Oryza barthii OBART02G27760 I 0.847
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.847
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.847
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.847
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.847
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.847
DREB1G Oryza sativa OS02G0677300 D 0.847
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.847
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.847
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.847
DREB1G Oryza indica BGIOSGA008804 I 0.847
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.832
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.832
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.798
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.798
OBART04G22220 Oryza barthii OBART04G22220 I 0.798
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.798
DREB1E Oryza sativa OS04G0572400 D 0.798
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.798
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.798
DREB1E Oryza indica BGIOSGA016950 I 0.798
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.798
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.798
Si011005m.g Setaria italica Si011005m.g I 0.787
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.787
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.787
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.776
DREB1A Arabidopsis thaliana AT4G25480 D 0.740
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.736
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.736
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.736
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.736
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.736
30147.m014313 Ricinus communis 30147.m014313 I 0.736
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.736
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.736
mgf026642m Mimulus guttatus mgf026642m I 0.734
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.734
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.730
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.729
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.727
PK23332.1 Cannabis sativa PK23332.1 I 0.727
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.726
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.726
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.725
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.725
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.724
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.724
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.724
Cla006315 Citrullus lanatus Cla006315 I 0.722
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.720
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.716
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.714
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.714
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.713
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.712
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.710
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.710
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.710
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.707
DREB1C Arabidopsis thaliana AT4G25470 D 0.705
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.705
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.704
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.704
Bo9g104770 Brassica oleracea Bo9g104770 I 0.704
DREB1D Arabidopsis thaliana AT5G51990 D 0.704
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.704
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.704
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.704
Bra028290 Brassica rapa Bra028290 I 0.704
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.704
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.704
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.704
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.704
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.703
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.702
Cla011674 Citrullus lanatus Cla011674 I 0.702
MDP0000154764 Malus domestica MDP0000154764 I 0.701
mgf019061m Mimulus guttatus mgf019061m I 0.701
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.700
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.700
MDP0000198054 Malus domestica MDP0000198054 I 0.699
TCM_016175 Theobroma cacao TCM_016175 I 0.699
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.698
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.698
Pm023775 Prunus mume Pm023775 I 0.698
Pm023769 Prunus mume Pm023769 I 0.698
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.698
Pm023772 Prunus mume Pm023772 I 0.696
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.695
Cla002362 Citrullus lanatus Cla002362 I 0.695
mgf017136m Mimulus guttatus mgf017136m I 0.693
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.692
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.692
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.691
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.690
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.689
Bra016763 Brassica rapa Bra016763 I 0.689
60638.m00016 Ricinus communis 60638.m00016 I 0.689
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.689
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.689
Bo01335s010 Brassica oleracea Bo01335s010 I 0.689
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.687
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.687
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.687
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.684
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.684
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.682
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.682
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.682
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.681
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.681
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.681
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.681
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.681
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.679
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.679
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.678
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.678
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.678
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.678