CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si039493m.g
(
Setaria italica
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Si039493m.g
T005388_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF14
M01647_2.00
Arabidopsis thaliana
NNVACAKN
NMTGTBNN
PBM
Weirauch et al.(2014)
pTH8296
0.736
0.816
RAV2
M01609_2.00
Arabidopsis thaliana
RCAACATH
DATGTTGY
PBM
Weirauch et al.(2014)
pTH8279
0.731
0.776
RAV1
M01645_2.00
Arabidopsis thaliana
NNNNVDCABN
NVTGHBNNNN
PBM
Weirauch et al.(2014)
pTH8249
0.722
0.776
TEM1
M01605_2.00
Arabidopsis thaliana
RCAACATW
WATGTTGY
PBM
Weirauch et al.(2014)
pTH8264
0.715
0.735
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si039493m
AP2
31
80
SRYKGVVPQPNGRWGAQIYERHARAWLGTFADEAMAARAYDVAALRFRGR
Links
Other
AP2
family TFs
Other
Setaria italica
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J21533
Panicum virgatum
Pavir.J21533
I
0.801
Traes_4DL_FE7B7E018
Triticum aestivum
Traes_4DL_FE7B7E018
I
0.773
Traes_4BL_5B2AF2556
Triticum aestivum
Traes_4BL_5B2AF2556
I
0.773
RAV2
Arabidopsis thaliana
AT1G68840
D
0.731
TEM1
Arabidopsis thaliana
AT1G25560
D
0.715
OLONG_017837
Oryza longistaminata
OLONG_017837
I
0.686