Solyc03g005510.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc03g005510.1 T005426_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.722 0.784
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.722 0.784
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.696 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g005510.1.1 AP2 48 100

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400013450 Solanum tuberosum PGSC0003DMG400013450 I 0.865
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.736
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.734
VIT_05s0049g00500 Vitis vinifera VIT_05s0049g00500 I 0.733
Thhalv10022200m.g Eutrema salsugineum Thhalv10022200m.g I 0.726
ERF095 Arabidopsis thaliana AT3G23220 D 0.722
cassava15834.m1 Manihot esculenta cassava15834.m1 I 0.710
POPTR_0008s16600 Populus trichocarpa POPTR_0008s16600 I 0.709
Ciclev10023352m.g Citrus clementina Ciclev10023352m.g I 0.708
orange1.1g043029m.g Citrus sinensis orange1.1g043029m.g I 0.708
MTR_1g048610 Medicago truncatula MTR_1g048610 I 0.707
cassava38545.m1 Manihot esculenta cassava38545.m1 I 0.701
PGSC0003DMG400046646 Solanum tuberosum PGSC0003DMG400046646 I 0.701
Solyc09g089920.1 Solanum lycopersicum Solyc09g089920.1 I 0.701
Carubv10011057m.g Capsella rubella Carubv10011057m.g I 0.700
Cagra.1671s0052 Capsella grandiflora Cagra.1671s0052 I 0.700
Bostr.26675s0318 Boechera stricta Bostr.26675s0318 I 0.700
cassava3323.m1 Manihot esculenta cassava3323.m1 I 0.699
ATERF14 Arabidopsis lyrata scaffold_100393.1 I 0.698
Thhalv10009418m.g Eutrema salsugineum Thhalv10009418m.g I 0.697
Bo5g004520 Brassica oleracea Bo5g004520 I 0.696
ERF14 Arabidopsis thaliana AT1G04370 D 0.696
Bra015310 Brassica rapa Bra015310 I 0.696
SapurV1A.0021s0990 Salix purpurea SapurV1A.0021s0990 I 0.694
SapurV1A.0292s0010 Salix purpurea SapurV1A.0292s0010 I 0.694
TCM_020870 Theobroma cacao TCM_020870 I 0.694
POPTR_0010s08310 Populus trichocarpa POPTR_0010s08310 I 0.692
orange1.1g048608m.g Citrus sinensis orange1.1g048608m.g I 0.691
Ciclev10006784m.g Citrus clementina Ciclev10006784m.g I 0.691
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.688
Si032351m.g Setaria italica Si032351m.g I 0.688
TCM_005704 Theobroma cacao TCM_005704 I 0.687
Bo7g040820 Brassica oleracea Bo7g040820 I 0.686
PK23186.1 Cannabis sativa PK23186.1 I 0.686
Bra014924 Brassica rapa Bra014924 I 0.686
BRADI1G75040 Brachypodium distachyon BRADI1G75040 I 0.686
POPTR_0010s08330 Populus trichocarpa POPTR_0010s08330 I 0.686
Gorai.001G252400 Gossypium raimondii Gorai.001G252400 I 0.685
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.684
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.684
Bo8g115580 Brassica oleracea Bo8g115580 I 0.684
Bra032512 Brassica rapa Bra032512 I 0.684
Pm009383 Prunus mume Pm009383 I 0.683
PRUPE_ppa018601mg Prunus persica PRUPE_ppa018601mg I 0.683
Gorai.011G172800 Gossypium raimondii Gorai.011G172800 I 0.683
GSMUA_Achr1G00480_001 Musa acuminata GSMUA_Achr1G00480_001 I 0.682
GLYMA10G33810 Glycine max GLYMA10G33810 I 0.681
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I 0.680
mgf021756m Mimulus guttatus mgf021756m I 0.680
Pavir.Ib00287 Panicum virgatum Pavir.Ib00287 I 0.679
Pavir.J22854 Panicum virgatum Pavir.J22854 I 0.679
AC198979.4_FG009 Zea mays AC198979.4_FG009 I 0.679
Sb01g046920 Sorghum bicolor Sb01g046920 I 0.679
Si039759m.g Setaria italica Si039759m.g I 0.679
Solyc05g052040.1 Solanum lycopersicum Solyc05g052040.1 I 0.678
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.678
gw1.115.66.1 Physcomitrella patens gw1.115.66.1 I 0.678
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.677
gene11441-v1.0-hybrid Fragaria vesca gene11441-v1.0-hybrid I 0.677