Solyc03g026270.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc03g026270.1 T005430_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.795 0.920
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.795 0.920
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.784 0.920
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.784 0.920
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.784 0.920
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.784 0.920
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.783 0.920
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.783 0.920
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.783 0.920
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.715 0.800
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.715 0.800
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.704 0.760
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.704 0.760
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.704 0.760
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.704 0.760
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.704 0.760
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.704 0.760
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.702 0.900
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.702 0.900
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.698 0.820
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN

NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.684 0.900
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN

NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.684 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g026270.1.1 AP2 49 100

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.836
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.826
PK23332.1 Cannabis sativa PK23332.1 I 0.820
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.820
mgf026642m Mimulus guttatus mgf026642m I 0.813
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.811
Cla002362 Citrullus lanatus Cla002362 I 0.809
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.808
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.808
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.807
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.806
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.805
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.805
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.805
Cla006315 Citrullus lanatus Cla006315 I 0.804
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.799
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.798
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.798
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.796
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.795
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.795
Bra028290 Brassica rapa Bra028290 I 0.795
Bo9g104770 Brassica oleracea Bo9g104770 I 0.795
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.795
DREB1D Arabidopsis thaliana AT5G51990 D 0.795
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.795
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.795
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.791
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.790
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.788
DREB1A Arabidopsis thaliana AT4G25480 D 0.784
DREB1C Arabidopsis thaliana AT4G25470 D 0.783
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.783
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.783
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.783
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.782
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.782
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.782
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.782
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.781
30147.m014313 Ricinus communis 30147.m014313 I 0.779
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.778
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.777
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.777
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.776
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.775
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.773
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.773
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.769
Cla011674 Citrullus lanatus Cla011674 I 0.768
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.766
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.766
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.765
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.765
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.765
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.764
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.762
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.762
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.762
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.761
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.761
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.761
mgf017136m Mimulus guttatus mgf017136m I 0.760
Ca_04504 Cicer arietinum Ca_04504 I 0.760
mgf026339m Mimulus guttatus mgf026339m I 0.757
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.756
MDP0000154764 Malus domestica MDP0000154764 I 0.756
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.756
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.756
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.756
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.756
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.755
MDP0000198054 Malus domestica MDP0000198054 I 0.755
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.754
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.753
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.753
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.753
Pm023775 Prunus mume Pm023775 I 0.753
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.753
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.753
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.752
30190.m011120 Ricinus communis 30190.m011120 I 0.752
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.752
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.752
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.751
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.751
TCM_016175 Theobroma cacao TCM_016175 I 0.751
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.747
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.745
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.745
mgf019061m Mimulus guttatus mgf019061m I 0.744
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.743
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.743
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.742
Pm023769 Prunus mume Pm023769 I 0.738
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.738
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.737
Pm023772 Prunus mume Pm023772 I 0.735
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.735
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.732
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.731
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.729
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.728
Pm019386 Prunus mume Pm019386 I 0.727
60638.m00016 Ricinus communis 60638.m00016 I 0.726
mgf022408m Mimulus guttatus mgf022408m I 0.725
mgf016974m Mimulus guttatus mgf016974m I 0.725
mgf018934m Mimulus guttatus mgf018934m I 0.725
mgf018631m Mimulus guttatus mgf018631m I 0.725
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.724
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.720
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.720
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.720
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.720
30190.m011119 Ricinus communis 30190.m011119 I 0.719
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.717
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.717
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.717
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.717
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.717
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.717
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.715
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.715
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.715
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.715
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.715
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.715
OBART02G27760 Oryza barthii OBART02G27760 I 0.715
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.715
DREB1G Oryza indica BGIOSGA008804 I 0.715
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.715
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.715
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.715
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.715
DREB1G Oryza sativa OS02G0677300 D 0.715
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.715
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.713
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.712
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.711
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.711
Ca_18948 Cicer arietinum Ca_18948 I 0.710
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.710
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.709
Bra016763 Brassica rapa Bra016763 I 0.709
Bo01335s010 Brassica oleracea Bo01335s010 I 0.709
Bra026963 Brassica rapa Bra026963 I 0.708
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.708
Bo8g108050 Brassica oleracea Bo8g108050 I 0.708
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.707
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.706
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.706
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.706
Ca_08732 Cicer arietinum Ca_08732 I 0.706
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.705
Si018262m.g Setaria italica Si018262m.g I 0.705
DREB1F Arabidopsis thaliana AT1G12610 D 0.704
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.704
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.703
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.702
Bo7g110320 Brassica oleracea Bo7g110320 I 0.702
Bra019162 Brassica rapa Bra019162 I 0.702
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.702
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.702
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.700
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.700
Bra022770 Brassica rapa Bra022770 I 0.699
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.699
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.699
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.698
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.698
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.698
OBART04G22220 Oryza barthii OBART04G22220 I 0.698
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.698
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.698
DREB1E Oryza sativa OS04G0572400 D 0.698
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.698
DREB1E Oryza indica BGIOSGA016950 I 0.698
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.698
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.697
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.697
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.697
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.695
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.695
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.694
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.693
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.688
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.686
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.685
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.685
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.685
DREB1B Arabidopsis thaliana AT4G25490 D 0.684
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.684
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.684
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.683
Si011005m.g Setaria italica Si011005m.g I 0.683
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.683
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.683
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.682
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.682
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.682
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.682
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.681
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.681
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.680
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.680
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.677