Solyc06g054630.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc06g054630.1 T005480_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.745 0.840
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.745 0.840
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.728 0.820
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.728 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g054630.1.1 AP2 10 61

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.820
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.778
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.778
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.773
Si008104m.g Setaria italica Si008104m.g I 0.771
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.765
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.765
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.759
Cla007584 Citrullus lanatus Cla007584 I 0.758
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.756
mgf021940m Mimulus guttatus mgf021940m I 0.753
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.751
Bra015882 Brassica rapa Bra015882 I 0.751
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.749
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.749
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.748
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.748
Pm027117 Prunus mume Pm027117 I 0.748
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.748
29739.m003716 Ricinus communis 29739.m003716 I 0.748
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.747
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.745
ERF018 Arabidopsis thaliana AT1G74930 D 0.745
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.745
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.742
Bo6g119120 Brassica oleracea Bo6g119120 I 0.742
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.741
Bo8g068370 Brassica oleracea Bo8g068370 I 0.740
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.740
Bra016518 Brassica rapa Bra016518 I 0.740
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.740
Cla011318 Citrullus lanatus Cla011318 I 0.739
Bo8g102870 Brassica oleracea Bo8g102870 I 0.739
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.739
Bra003780 Brassica rapa Bra003780 I 0.739
Bra031069 Brassica rapa Bra031069 I 0.739
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.739
TCM_037415 Theobroma cacao TCM_037415 I 0.739
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.738
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.738
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.738
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.738
Bo6g086740 Brassica oleracea Bo6g086740 I 0.738
MDP0000649022 Malus domestica MDP0000649022 I 0.737
OBART08G16950 Oryza barthii OBART08G16950 I 0.736
OS08G0454000 Oryza sativa OS08G0454000 I 0.736
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.736
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.736
29739.m003647 Ricinus communis 29739.m003647 I 0.736
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.736
Si015027m.g Setaria italica Si015027m.g I 0.736
OB08G24280 Oryza brachyantha OB08G24280 I 0.736
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.736
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.736
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.736
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.736
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.736
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.736
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.736
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.736
mgf024162m Mimulus guttatus mgf024162m I 0.734
mgf025452m Mimulus guttatus mgf025452m I 0.732
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.732
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.732
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.732
Cla022291 Citrullus lanatus Cla022291 I 0.731
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.731
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.730
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.730
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.729
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.728
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.728
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.728
ERF017 Arabidopsis thaliana AT1G19210 D 0.728
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.728
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.728
TCM_037486 Theobroma cacao TCM_037486 I 0.728
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.727
F775_23111 Aegilops tauschii F775_23111 I 0.727
MDP0000704216 Malus domestica MDP0000704216 I 0.725
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.724
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.723
Si019636m.g Setaria italica Si019636m.g I 0.723
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.723
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.723
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.720
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.720
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.720
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.719
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.718
Ca_01683 Cicer arietinum Ca_01683 I 0.718
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.718
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.718
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.717
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.717
Ca_09124 Cicer arietinum Ca_09124 I 0.716
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.716
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.716
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.716
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.715
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.714
ERF016 Arabidopsis thaliana AT5G21960 I 0.714
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.713
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.712
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.711
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.711
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.711
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.708
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.708
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.708
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.708
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.708
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.708
OS02G0781300 Oryza sativa OS02G0781300 I 0.708
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.708
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.707
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.706
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.706
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.706
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.706
Bra002377 Brassica rapa Bra002377 I 0.706
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.706
Bo9g149820 Brassica oleracea Bo9g149820 I 0.706
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.705
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.705
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.704
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.704
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.704
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.704
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.704
Ca_19295 Cicer arietinum Ca_19295 I 0.704
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.704
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.704
OBART06G06190 Oryza barthii OBART06G06190 I 0.704
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.704
Ca_19297 Cicer arietinum Ca_19297 I 0.703
Bra025719 Brassica rapa Bra025719 I 0.703
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.702
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.702
Sb07g022265 Sorghum bicolor Sb07g022265 I 0.701
Ca_19296 Cicer arietinum Ca_19296 I 0.699
Bra006599 Brassica rapa Bra006599 I 0.697
Bo3g015600 Brassica oleracea Bo3g015600 I 0.697
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.697
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.696
Bra020162 Brassica rapa Bra020162 I 0.695
Pavir.Da01882 Panicum virgatum Pavir.Da01882 N 0.689
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.687
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.686
Bo2g023630 Brassica oleracea Bo2g023630 I 0.686
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.683
OMERI06G09430 Oryza meridionalis OMERI06G09430 N 0.682
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N 0.682
ONIVA06G07220 Oryza nivara ONIVA06G07220 N 0.681
OGLUM06G06550 Oryza glumaepatula OGLUM06G06550 N 0.680
OBART06G06230 Oryza barthii OBART06G06230 N 0.680
ORGLA06G0057400 Oryza glaberrima ORGLA06G0057400 N 0.680
OBART06G06220 Oryza barthii OBART06G06220 N 0.679
OMERI03G32220 Oryza meridionalis OMERI03G32220 N 0.679
ORGLA06G0057300 Oryza glaberrima ORGLA06G0057300 N 0.679
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.678
OPUNC06G07550 Oryza punctata OPUNC06G07550 N 0.678
PK18548.1 Cannabis sativa PK18548.1 I 0.677
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.677