CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc07g064890.1
(
Solanum lycopersicum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Solyc07g064890.1
T005495_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.745
0.913
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.745
0.913
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.745
0.913
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.732
0.826
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.732
0.826
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.732
0.826
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.711
0.804
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.678
0.696
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.678
0.696
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.678
0.696
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc07g064890.1.1
AP2
38
88
RFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGP
Links
Other
AP2
family TFs
Other
Solanum lycopersicum
TFs
238 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g045783m.g
Citrus sinensis
orange1.1g045783m.g
I
0.818
Ciclev10009361m.g
Citrus clementina
Ciclev10009361m.g
I
0.818
PK25211.1
Cannabis sativa
PK25211.1
I
0.818
Solyc10g006130.1
Solanum lycopersicum
Solyc10g006130.1
I
0.814
29640.m000403
Ricinus communis
29640.m000403
I
0.810
PGSC0003DMG400022305
Solanum tuberosum
PGSC0003DMG400022305
I
0.810
POPTR_0001s36610
Populus trichocarpa
POPTR_0001s36610
I
0.810
mgf007166m
Mimulus guttatus
mgf007166m
I
0.808
orange1.1g027990m.g
Citrus sinensis
orange1.1g027990m.g
I
0.808
mgf016282m
Mimulus guttatus
mgf016282m
I
0.808
MDP0000839828
Malus domestica
MDP0000839828
I
0.808
VIT_12s0059g01460
Vitis vinifera
VIT_12s0059g01460
I
0.808
Pm014953
Prunus mume
Pm014953
I
0.808
Ciclev10016668m.g
Citrus clementina
Ciclev10016668m.g
I
0.808
gene01152-v1.0-hybrid
Fragaria vesca
gene01152-v1.0-hybrid
I
0.808
PRUPE_ppa010804mg
Prunus persica
PRUPE_ppa010804mg
I
0.808
evm.TU.supercontig_12.251
Carica papaya
evm.TU.supercontig_12.251
I
0.808
PGSC0003DMG400014417
Solanum tuberosum
PGSC0003DMG400014417
I
0.806
MDP0000542633
Malus domestica
MDP0000542633
I
0.803
MDP0000629527
Malus domestica
MDP0000629527
I
0.803
Pm011907
Prunus mume
Pm011907
I
0.803
Aquca_027_00311
Aquilegia coerulea
Aquca_027_00311
I
0.798
evm.TU.supercontig_132.31
Carica papaya
evm.TU.supercontig_132.31
I
0.795
SapurV1A.0126s0320
Salix purpurea
SapurV1A.0126s0320
I
0.791
SapurV1A.0126s0330
Salix purpurea
SapurV1A.0126s0330
I
0.791
cassava43266.valid.m1
Manihot esculenta
cassava43266.valid.m1
I
0.787
PRUPE_ppa010893mg
Prunus persica
PRUPE_ppa010893mg
I
0.787
chr2.LjT24P12.30.nd
Lotus japonicus
chr2.LjT24P12.30.nd
I
0.785
MDP0000744693
Malus domestica
MDP0000744693
I
0.782
MDP0000243113
Malus domestica
MDP0000243113
I
0.782
Bo6g022410
Brassica oleracea
Bo6g022410
I
0.781
GSMUA_Achr1G18230_001
Musa acuminata
GSMUA_Achr1G18230_001
I
0.779
Cla005423
Citrullus lanatus
Cla005423
I
0.779
Lus10029987.g
Linum usitatissimum
Lus10029987.g
I
0.777
Lus10035329.g
Linum usitatissimum
Lus10035329.g
I
0.777
VIT_19s0090g01080
Vitis vinifera
VIT_19s0090g01080
I
0.774
GLYMA14G05470
Glycine max
GLYMA14G05470
I
0.772
GLYMA02G43500
Glycine max
GLYMA02G43500
I
0.772
Cucsa.042770
Cucumis sativus
Cucsa.042770
I
0.771
GSMUA_Achr4G11430_001
Musa acuminata
GSMUA_Achr4G11430_001
I
0.769
GSMUA_Achr4G04060_001
Musa acuminata
GSMUA_Achr4G04060_001
I
0.769
GLYMA02G46340
Glycine max
GLYMA02G46340
I
0.765
Cla003319
Citrullus lanatus
Cla003319
I
0.763
Cucsa.190200
Cucumis sativus
Cucsa.190200
I
0.763
Gorai.007G312200
Gossypium raimondii
Gorai.007G312200
I
0.760
GSMUA_Achr4G06170_001
Musa acuminata
GSMUA_Achr4G06170_001
I
0.756
TCM_030804
Theobroma cacao
TCM_030804
I
0.755
Gorai.002G092900
Gossypium raimondii
Gorai.002G092900
I
0.755
Thhalv10021393m.g
Eutrema salsugineum
Thhalv10021393m.g
I
0.754
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.753
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.753
Cucsa.139820
Cucumis sativus
Cucsa.139820
I
0.752
cassava34729.m1
Manihot esculenta
cassava34729.m1
I
0.751
OPUNC02G05940
Oryza punctata
OPUNC02G05940
I
0.750
LPERR02G05920
Leersia perrieri
LPERR02G05920
I
0.750
Pavir.Ab00660
Panicum virgatum
Pavir.Ab00660
I
0.749
Sb04g006080
Sorghum bicolor
Sb04g006080
I
0.749
Pavir.Aa03102
Panicum virgatum
Pavir.Aa03102
I
0.749
GRMZM2G079653
Zea mays
GRMZM2G079653
I
0.749
BRADI3G06562
Brachypodium distachyon
BRADI3G06562
I
0.749
GRMZM2G146028
Zea mays
GRMZM2G146028
I
0.749
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.747
Lus10031526.g
Linum usitatissimum
Lus10031526.g
I
0.747
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.747
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.747
ERF3
Arabidopsis thaliana
AT1G50640
D
0.745
Eucgr.A01091
Eucalyptus grandis
Eucgr.A01091
I
0.743
OMERI02G07840
Oryza meridionalis
OMERI02G07840
I
0.742
OGLUM02G06860
Oryza glumaepatula
OGLUM02G06860
I
0.742
ORGLA02G0063000
Oryza glaberrima
ORGLA02G0063000
I
0.742
Cla013723
Citrullus lanatus
Cla013723
I
0.742
ORUFI02G06880
Oryza rufipogon
ORUFI02G06880
I
0.742
Bra018864
Brassica rapa
Bra018864
I
0.740
PGSC0003DMG400000681
Solanum tuberosum
PGSC0003DMG400000681
I
0.739
Gorai.009G443400
Gossypium raimondii
Gorai.009G443400
I
0.736
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.735
GLYMA14G02360
Glycine max
GLYMA14G02360
I
0.735
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.734
ERF7
Arabidopsis thaliana
AT3G20310
D
0.732
Bostr.26675s0113
Boechera stricta
Bostr.26675s0113
I
0.731
ERF3
Arabidopsis lyrata
fgenesh2_kg.1__4150__AT1G50640.1
I
0.731
gene03450-v1.0-hybrid
Fragaria vesca
gene03450-v1.0-hybrid
I
0.731
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.730
Solyc07g049490.1
Solanum lycopersicum
Solyc07g049490.1
I
0.730
Ca_17824
Cicer arietinum
Ca_17824
I
0.729
GSMUA_Achr3G13010_001
Musa acuminata
GSMUA_Achr3G13010_001
I
0.728
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.726
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.726
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.726
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.724
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.724
PK02998.1
Cannabis sativa
PK02998.1
I
0.724
Ca_12205
Cicer arietinum
Ca_12205
I
0.724
Gorai.013G169500
Gossypium raimondii
Gorai.013G169500
I
0.723
GLYMA06G44430
Glycine max
GLYMA06G44430
I
0.722
Sb03g037085
Sorghum bicolor
Sb03g037085
I
0.722
Pavir.Eb03165
Panicum virgatum
Pavir.Eb03165
I
0.720
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.720
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.720
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.720
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.717
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.717
Pm020210
Prunus mume
Pm020210
I
0.717
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.715
gene21403-v1.0-hybrid
Fragaria vesca
gene21403-v1.0-hybrid
I
0.714
GLYMA12G13315
Glycine max
GLYMA12G13315
I
0.714
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.713
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.713
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.711
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.711
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.711
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.711
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.711
30190.m011323
Ricinus communis
30190.m011323
I
0.711
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.711
Pm010083
Prunus mume
Pm010083
I
0.711
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.711
Cla020002
Citrullus lanatus
Cla020002
I
0.711
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.711
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.711
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.711
mgf023367m
Mimulus guttatus
mgf023367m
I
0.711
PK17878.1
Cannabis sativa
PK17878.1
D
0.711
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.711
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.711
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.711
TCM_029823
Theobroma cacao
TCM_029823
I
0.711
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.711
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.711
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.711
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.711
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.711
Ca_00326
Cicer arietinum
Ca_00326
I
0.711
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.711
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.710
Bra001784
Brassica rapa
Bra001784
I
0.710
Bo3g074840
Brassica oleracea
Bo3g074840
I
0.710
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.708
SELMODRAFT_17648
Selaginella moellendorffii
SELMODRAFT_17648
I
0.707
cassava6588.valid.m1
Manihot esculenta
cassava6588.valid.m1
I
0.707
SELMODRAFT_129122
Selaginella moellendorffii
SELMODRAFT_129122
I
0.707
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.705
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.705
TRAES3BF075600040CFD_g
Triticum aestivum
TRAES3BF075600040CFD_g
I
0.704
Si003053m.g
Setaria italica
Si003053m.g
I
0.704
BRADI2G52380
Brachypodium distachyon
BRADI2G52380
I
0.704
MLOC_66843
Hordeum vulgare
MLOC_66843
I
0.703
SELMODRAFT_430375
Selaginella moellendorffii
SELMODRAFT_430375
I
0.703
MDP0000457509
Malus domestica
MDP0000457509
I
0.703
SELMODRAFT_443461
Selaginella moellendorffii
SELMODRAFT_443461
I
0.703
BRADI2G21067
Brachypodium distachyon
BRADI2G21067
I
0.702
ERF12
Arabidopsis thaliana
AT1G28360
I
0.701
Carubv10014475m.g
Capsella rubella
Carubv10014475m.g
I
0.701
Carubv10011585m.g
Capsella rubella
Carubv10011585m.g
I
0.701
Bra030094
Brassica rapa
Bra030094
I
0.701
Bra032898
Brassica rapa
Bra032898
I
0.701
Bo5g055840
Brassica oleracea
Bo5g055840
I
0.701
Bra010881
Brassica rapa
Bra010881
I
0.701
GLYMA08G43300
Glycine max
GLYMA08G43300
I
0.701
Bo7g048190
Brassica oleracea
Bo7g048190
I
0.701
Thhalv10009947m.g
Eutrema salsugineum
Thhalv10009947m.g
I
0.701
ERF12
Arabidopsis lyrata
fgenesh2_kg.1__3004__AT1G28360.1
I
0.701
Bo3g143340
Brassica oleracea
Bo3g143340
I
0.701
Cagra.1822s0023
Capsella grandiflora
Cagra.1822s0023
I
0.701
GLYMA18G10290
Glycine max
GLYMA18G10290
I
0.701
Cagra.0316s0033
Capsella grandiflora
Cagra.0316s0033
I
0.701
Bostr.15697s0156
Boechera stricta
Bostr.15697s0156
I
0.701
GRMZM2G020150
Zea mays
GRMZM2G020150
I
0.700
AMTR_s00077p00176570
Amborella trichopoda
AMTR_s00077p00176570
I
0.700
GRMZM2G174347
Zea mays
GRMZM2G174347
I
0.699
Bostr.26675s0388
Boechera stricta
Bostr.26675s0388
I
0.695
Gorai.004G032500
Gossypium raimondii
Gorai.004G032500
I
0.695
Pavir.Fb01486
Panicum virgatum
Pavir.Fb01486
I
0.694
Pavir.Fb00952
Panicum virgatum
Pavir.Fb00952
I
0.694
Pavir.Fa01730
Panicum virgatum
Pavir.Fa01730
I
0.694
MDP0000236605
Malus domestica
MDP0000236605
I
0.693
MDP0000310904
Malus domestica
MDP0000310904
I
0.693
Bostr.19424s0625
Boechera stricta
Bostr.19424s0625
I
0.692
Pavir.Ea03148
Panicum virgatum
Pavir.Ea03148
I
0.691
Lus10035076.g
Linum usitatissimum
Lus10035076.g
I
0.691
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.689
Bo1g108970
Brassica oleracea
Bo1g108970
I
0.688
Bra038261
Brassica rapa
Bra038261
I
0.688
Ca_20544
Cicer arietinum
Ca_20544
I
0.688
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.687
Eucgr.K00734
Eucalyptus grandis
Eucgr.K00734
I
0.685
fgenesh1_pg.scaffold_6000034
Physcomitrella patens
fgenesh1_pg.scaffold_6000034
I
0.685
Bo5g109800
Brassica oleracea
Bo5g109800
I
0.685
ATERF-7
Arabidopsis lyrata
fgenesh2_kg.3__2255__AT3G20310.1
I
0.685
Bra035792
Brassica rapa
Bra035792
I
0.685
gw1.105.71.1
Physcomitrella patens
gw1.105.71.1
I
0.684
SELMODRAFT_19889
Selaginella moellendorffii
SELMODRAFT_19889
I
0.684
SELMODRAFT_59974
Selaginella moellendorffii
SELMODRAFT_59974
I
0.684
orange1.1g028454m.g
Citrus sinensis
orange1.1g028454m.g
I
0.683
POPTR_0001s40770
Populus trichocarpa
POPTR_0001s40770
I
0.683
Bra001588
Brassica rapa
Bra001588
I
0.683
27904.m000217
Ricinus communis
27904.m000217
I
0.683
GSMUA_Achr9G11480_001
Musa acuminata
GSMUA_Achr9G11480_001
I
0.683
TCM_031608
Theobroma cacao
TCM_031608
I
0.683
estExt_Genemark1.C_100079
Coccomyxa subellipsoidea C169
estExt_Genemark1.C_100079
I
0.683
GLYMA12G26836
Glycine max
GLYMA12G26836
I
0.683
Ciclev10009484m.g
Citrus clementina
Ciclev10009484m.g
I
0.683
Bostr.28625s0184
Boechera stricta
Bostr.28625s0184
I
0.683
estExt_fgeneshCV_pg.C_120242
Chlorella vulgaris
estExt_fgeneshCV_pg.C_120242
I
0.683
cassava37846.valid.m1
Manihot esculenta
cassava37846.valid.m1
I
0.683
evm.TU.supercontig_131.83
Carica papaya
evm.TU.supercontig_131.83
I
0.683
POPTR_0011s11620
Populus trichocarpa
POPTR_0011s11620
I
0.683
Gorai.009G375700
Gossypium raimondii
Gorai.009G375700
I
0.683
Ca_22534
Cicer arietinum
Ca_22534
I
0.683
SapurV1A.1325s0040
Salix purpurea
SapurV1A.1325s0040
I
0.683
Bo3g066710
Brassica oleracea
Bo3g066710
I
0.683
PK23186.1
Cannabis sativa
PK23186.1
I
0.682
Lus10043182.g
Linum usitatissimum
Lus10043182.g
I
0.682
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.682
Lus10017907.g
Linum usitatissimum
Lus10017907.g
I
0.682
e_gw1.5.258.1
Physcomitrella patens
e_gw1.5.258.1
I
0.681
Si036615m.g
Setaria italica
Si036615m.g
I
0.681
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.681
Bra039658
Brassica rapa
Bra039658
I
0.681
fgenesh2_kg.3__2537__AT3G23220.1
Arabidopsis lyrata
fgenesh2_kg.3__2537__AT3G23220.1
I
0.680
F775_20810
Aegilops tauschii
F775_20810
I
0.680
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.679
SELMODRAFT_439762
Selaginella moellendorffii
SELMODRAFT_439762
I
0.679
SELMODRAFT_402810
Selaginella moellendorffii
SELMODRAFT_402810
I
0.679
ERF13
Arabidopsis thaliana
AT2G44840
D
0.678
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.678
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.678
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.678
Bra004873
Brassica rapa
Bra004873
I
0.678
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.678
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.678
Bra037630
Brassica rapa
Bra037630
I
0.678
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.678
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.678
Bo1g102220
Brassica oleracea
Bo1g102220
I
0.677
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.677
MTR_5g085100
Medicago truncatula
MTR_5g085100
I
0.677
Bra023748
Brassica rapa
Bra023748
I
0.677