Solyc08g007820.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc08g007820.1 T005497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.739 0.780
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.739 0.780
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.739 0.780
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.739 0.780
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.739 0.780
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.739 0.780
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.731 0.780
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.731 0.780
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.731 0.780
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.731 0.780
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.711 0.740
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.702 0.740
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.702 0.740
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.701 0.760
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.701 0.760
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.695 0.760
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.695 0.760
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.695 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g007820.1.1 AP2 49 100

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.834
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.830
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.784
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.778
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.777
MDP0000198054 Malus domestica MDP0000198054 I 0.767
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.767
mgf019061m Mimulus guttatus mgf019061m I 0.765
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.765
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.763
Cla011674 Citrullus lanatus Cla011674 I 0.762
mgf017136m Mimulus guttatus mgf017136m I 0.760
MDP0000154764 Malus domestica MDP0000154764 I 0.758
Pm023775 Prunus mume Pm023775 I 0.758
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.758
Pm023772 Prunus mume Pm023772 I 0.757
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.755
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.753
Pm023769 Prunus mume Pm023769 I 0.753
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.751
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.743
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.742
Bo01335s010 Brassica oleracea Bo01335s010 I 0.742
Bra016763 Brassica rapa Bra016763 I 0.742
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.741
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.740
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.739
DREB1F Arabidopsis thaliana AT1G12610 D 0.739
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.739
30147.m014313 Ricinus communis 30147.m014313 I 0.739
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.738
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.738
Bo8g108050 Brassica oleracea Bo8g108050 I 0.736
Bra026963 Brassica rapa Bra026963 I 0.736
30190.m011120 Ricinus communis 30190.m011120 I 0.735
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.734
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.734
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.734
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.732
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.732
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.732
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.732
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.732
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.731
DREB1A Arabidopsis thaliana AT4G25480 D 0.731
mgf026642m Mimulus guttatus mgf026642m I 0.730
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.729
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.726
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.726
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.726
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.726
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.726
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.726
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.726
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.726
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.726
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.726
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.726
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.726
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.725
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.724
PK23332.1 Cannabis sativa PK23332.1 I 0.724
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.724
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.723
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.723
Cla006315 Citrullus lanatus Cla006315 I 0.723
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.723
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.721
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.720
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.720
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.718
60638.m00016 Ricinus communis 60638.m00016 I 0.716
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.716
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.713
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.713
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.713
TCM_016175 Theobroma cacao TCM_016175 I 0.712
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.711
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.711
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.711
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.711
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.711
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.710
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.710
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.709
Ca_08732 Cicer arietinum Ca_08732 I 0.708
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.708
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.708
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.707
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.707
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.706
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.706
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.704
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.703
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.702
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.702
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.702
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.702
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.702
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.702
DREB1G Oryza indica BGIOSGA008804 I 0.702
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.702
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.702
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.702
DREB1G Oryza sativa OS02G0677300 D 0.702
OBART02G27760 Oryza barthii OBART02G27760 I 0.702
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.702
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.702
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.702
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.701
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.701
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.701
Bra028290 Brassica rapa Bra028290 I 0.701
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.701
Bo9g104770 Brassica oleracea Bo9g104770 I 0.701
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.701
DREB1D Arabidopsis thaliana AT5G51990 D 0.701
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.701
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.700
30190.m011119 Ricinus communis 30190.m011119 I 0.697
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.697
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.697
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.697
Bra019777 Brassica rapa Bra019777 I 0.696
Bo5g016750 Brassica oleracea Bo5g016750 I 0.696
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.695
DREB1C Arabidopsis thaliana AT4G25470 D 0.695
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.692
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.692
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.692
Si018262m.g Setaria italica Si018262m.g I 0.692
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.692
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.692
Cla002362 Citrullus lanatus Cla002362 I 0.692
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.689
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.687
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.684
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.684
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.684
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.684
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.684
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.683
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.683
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.683
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.683
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.683
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.681
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.681
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.680
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.679
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.679
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.677