Solyc11g042560.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc11g042560.1 T005539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.732 0.780
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.732 0.780
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN

NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.683 0.780
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA

TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.683 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc11g042560.1.1 AP2 12 63

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.786
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.785
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.757
TCM_036269 Theobroma cacao TCM_036269 I 0.756
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.756
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.755
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.751
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.748
Cla012665 Citrullus lanatus Cla012665 I 0.746
Pm004272 Prunus mume Pm004272 I 0.746
Bra016136 Brassica rapa Bra016136 I 0.745
Bo6g113020 Brassica oleracea Bo6g113020 I 0.743
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.741
MDP0000283350 Malus domestica MDP0000283350 I 0.740
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.739
Cla012661 Citrullus lanatus Cla012661 I 0.737
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.737
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.737
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.736
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.733
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.732
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.732
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.732
ERF021 Arabidopsis thaliana AT1G71450 D 0.732
Bo2g072910 Brassica oleracea Bo2g072910 I 0.732
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.729
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.728
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.728
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.728
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.728
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.728
MDP0000122739 Malus domestica MDP0000122739 I 0.727
MDP0000122740 Malus domestica MDP0000122740 I 0.727
MDP0000151428 Malus domestica MDP0000151428 I 0.727
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.726
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.726
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.726
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.725
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.724
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.722
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.722
Bra010210 Brassica rapa Bra010210 I 0.722
Bo5g086680 Brassica oleracea Bo5g086680 I 0.722
Pm004269 Prunus mume Pm004269 I 0.722
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.721
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.721
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.721
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.721
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.721
Bo8g027240 Brassica oleracea Bo8g027240 I 0.720
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.719
28118.m000034 Ricinus communis 28118.m000034 I 0.719
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.719
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.719
Si026882m.g Setaria italica Si026882m.g I 0.719
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.718
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.718
Ca_15064 Cicer arietinum Ca_15064 I 0.717
Bra007975 Brassica rapa Bra007975 I 0.717
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.717
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.716
ERF022 Arabidopsis thaliana AT1G33760 I 0.715
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.714
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.714
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.713
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.713
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.712
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.711
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.711
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.710
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.710
TCM_036270 Theobroma cacao TCM_036270 I 0.707
27805.m000021 Ricinus communis 27805.m000021 I 0.705
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.703
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.701
Bra028009 Brassica rapa Bra028009 I 0.701
F775_17299 Aegilops tauschii F775_17299 I 0.700
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.700
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.700
mgf020568m Mimulus guttatus mgf020568m I 0.700
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.700
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.700
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.700
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.700
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.699
OB11G16300 Oryza brachyantha OB11G16300 I 0.699
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.699
Bo6g094210 Brassica oleracea Bo6g094210 I 0.699
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.699
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.699
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.699
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.699
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.699
Bra003924 Brassica rapa Bra003924 I 0.699
OS11G0242300 Oryza sativa OS11G0242300 I 0.699
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.699
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.699
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.699
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.699
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.698
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.698
TCM_005130 Theobroma cacao TCM_005130 I 0.696
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.696
Bo6g046850 Brassica oleracea Bo6g046850 I 0.695
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.694
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.694
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.694
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.694
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.693
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.692
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.690
Ca_01325 Cicer arietinum Ca_01325 I 0.690
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.689
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.689
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.688
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.688
Pm018354 Prunus mume Pm018354 I 0.688
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.688
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.687
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.686
PK15554.1 Cannabis sativa PK15554.1 I 0.686
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.686
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.686
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.686
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.685
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.684
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.684
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.683
ERF023 Arabidopsis thaliana AT1G01250 D 0.683
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.683
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.683
29742.m001400 Ricinus communis 29742.m001400 I 0.682
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.682
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.681
Bra032630 Brassica rapa Bra032630 I 0.679
Ca_17638 Cicer arietinum Ca_17638 I 0.677
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.677