CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc12g056430.1
(
Solanum lycopersicum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Solyc12g056430.1
T005556_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.684
0.680
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.684
0.680
DREB1E
M09702_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.684
0.680
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc12g056430.1.1
AP2
42
93
PVFRGVRKRDNDKWVCEIREPTKQKRIWLGTYLTAEMAARAHDVAALALKGE
Links
Other
AP2
family TFs
Other
Solanum lycopersicum
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy