CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_08s0007g03790
(
Vitis vinifera
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
VIT_08s0007g03790
T006068_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.679
0.735
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.679
0.735
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_08s0007g03790.t01
AP2
58
108
PLYKGVRQRNGKWVCELRQPRKRNRIWLGTFPCPDMAARAYDVAALAIKGD
Links
Other
AP2
family TFs
Other
Vitis vinifera
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Eucgr.K02069
Eucalyptus grandis
Eucgr.K02069
N
0.702
Ca_20127
Cicer arietinum
Ca_20127
N
0.682
Carubv10027759m.g
Capsella rubella
Carubv10027759m.g
I
0.679
Bo9g104770
Brassica oleracea
Bo9g104770
I
0.679
Thhalv10015252m.g
Eutrema salsugineum
Thhalv10015252m.g
I
0.679
Cagra.0094s0011
Capsella grandiflora
Cagra.0094s0011
I
0.679
Bostr.15774s0346
Boechera stricta
Bostr.15774s0346
I
0.679
CBF4
Arabidopsis lyrata
scaffold_801637.1
I
0.679
DREB1D
Arabidopsis thaliana
AT5G51990
D
0.679
Bra028290
Brassica rapa
Bra028290
I
0.679