CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ca_08732
(
Cicer arietinum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Ca_08732
T006311_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.686
0.784
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.686
0.784
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ca_08732
AP2
43
95
PVYRGVRKRNNNKWVCEVRVPKNKSSRIWLGTYPTAEMAARAHDVAALALRGK
Links
Other
AP2
family TFs
Other
Cicer arietinum
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy