CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ca_18948
(
Cicer arietinum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Ca_18948
T006375_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.733
0.940
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.733
0.940
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.727
0.820
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.727
0.820
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.724
0.920
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.724
0.920
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.708
0.860
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.708
0.860
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.701
0.840
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.701
0.840
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.701
0.840
Q8LKX0_MAIZE
M09722_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.695
0.900
Q5MAR7_BRANA
M09742_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.693
0.880
Q3HS44_BRANA
M09741_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.693
0.880
Q3HS43_BRANA
M09740_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.693
0.880
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.688
0.760
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.688
0.760
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.688
0.760
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.687
0.780
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.687
0.780
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.687
0.780
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.687
0.780
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.677
0.860
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.677
0.860
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.677
0.860
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.677
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ca_18948
AP2
20
71
PTYRGVRMRNWGKWVCEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGN
Links
Other
AP2
family TFs
Other
Cicer arietinum
TFs
375 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy